Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00384 * 2 1 4 4 H 1.48504 * 109.47010 * 269.99968 * 3 2 1 5 5 H 1.48503 * 109.47178 * 29.99729 * 3 2 1 6 6 H 1.48494 * 109.47003 * 149.99746 * 3 2 1 7 7 C 1.37876 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00290 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99892 * 180.02562 * 7 2 1 10 10 H 1.08992 * 109.88050 * 62.83691 * 9 7 2 11 11 N 1.47442 * 109.88554 * 301.63190 * 9 7 2 12 12 C 1.47844 * 108.57110 * 239.60258 * 11 9 7 13 13 C 1.54906 * 104.79332 * 24.10504 * 12 11 9 14 14 C 1.54321 * 109.88870 * 183.86743 * 9 7 2 15 15 H 1.08994 * 110.70776 * 215.67892 * 14 9 7 16 16 C 1.50704 * 110.70505 * 338.74245 * 14 9 7 17 17 C 1.38667 * 120.42338 * 86.74065 * 16 14 9 18 18 C 1.38627 * 118.41955 * 180.26396 * 17 16 14 19 19 C 1.38233 * 119.16274 * 359.48331 * 18 17 16 20 20 N 1.31855 * 120.75996 * 0.25565 * 19 18 17 21 21 C 1.31887 * 121.72609 * 0.02562 * 20 19 18 22 22 H 0.96999 * 119.99140 * 0.02562 * 1 2 3 23 23 H 1.00901 * 111.00440 * 1.88279 * 11 9 7 24 24 H 1.09005 * 110.36859 * 142.92589 * 12 11 9 25 25 H 1.09000 * 110.37756 * 265.16125 * 12 11 9 26 26 H 1.09006 * 110.98917 * 204.84010 * 13 12 11 27 27 H 1.08996 * 110.99861 * 81.01588 * 13 12 11 28 28 H 1.08002 * 120.78954 * 0.02918 * 17 16 14 29 29 H 1.08002 * 120.42030 * 179.76344 * 18 17 16 30 30 H 1.07997 * 119.61903 * 180.27621 * 19 18 17 31 31 H 1.08000 * 119.61254 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8818 -0.7261 0.9131 11 7 4.0135 -0.4673 -1.1794 12 6 4.8408 -1.3910 -1.9844 13 6 4.3320 -2.8056 -1.6105 14 6 4.0365 -2.6421 -0.0962 15 1 4.9461 -2.7626 0.4920 16 6 2.9821 -3.6222 0.3496 17 6 2.0415 -4.0995 -0.5506 18 6 1.0870 -4.9955 -0.0946 19 6 1.1110 -5.3888 1.2304 20 7 2.0240 -4.9182 2.0571 21 6 2.9436 -4.0605 1.6595 22 1 -0.4849 0.8401 -0.0004 23 1 3.2514 -0.0947 -1.7257 24 1 4.6931 -1.2036 -3.0480 25 1 5.8935 -1.2832 -1.7234 26 1 5.1050 -3.5556 -1.7786 27 1 3.4243 -3.0524 -2.1611 28 1 2.0500 -3.7780 -1.5816 29 1 0.3369 -5.3848 -0.7671 30 1 0.3736 -6.0899 1.5924 31 1 3.6750 -3.6967 2.3659 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267265.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = 22.615570 kcal Electronic energy + Delta-G solvation = -14878.462414 eV Core-core repulsion = 12544.838469 eV Total energy + Delta-G solvation = -2333.623946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.32818 -39.16926 -34.54524 -33.88216 -32.58637 -30.78147 -29.21250 -26.28803 -24.44223 -23.80484 -22.15288 -20.60592 -19.08188 -17.91148 -17.29860 -16.95435 -16.04230 -15.74289 -15.46450 -14.97629 -14.59987 -14.30807 -14.12495 -13.83996 -13.39712 -12.78526 -12.64144 -12.61859 -12.10700 -11.98333 -11.66991 -11.48415 -11.28579 -10.76220 -10.33036 -10.25304 -9.60043 -9.10416 -8.24707 -6.32969 0.38550 0.53838 1.41453 1.43856 1.63650 2.40422 3.00478 3.09198 3.57452 3.75546 3.83917 4.07826 4.18341 4.23308 4.30592 4.36017 4.49946 4.69650 4.76516 4.92722 4.95925 5.00261 5.12841 5.27012 5.39515 5.43070 5.57490 5.68851 5.95809 6.15189 6.35304 6.72720 6.85875 7.16443 7.37129 8.87324 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.027717 B = 0.012801 C = 0.010158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.953084 B = 2186.863162 C = 2755.812817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.314 1.314 6 H -0.254 1.254 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.176 3.824 10 H 0.030 0.970 11 N -0.705 5.705 12 C 0.049 3.951 13 C -0.135 4.135 14 C -0.055 4.055 15 H 0.090 0.910 16 C -0.082 4.082 17 C -0.073 4.073 18 C -0.177 4.177 19 C 0.068 3.932 20 N -0.508 5.508 21 C 0.072 3.928 22 H 0.262 0.738 23 H 0.327 0.673 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.133 0.867 29 H 0.152 0.848 30 H 0.175 0.825 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 -7.603 -3.604 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.243 1.243 6 H -0.178 1.178 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.068 3.932 10 H 0.048 0.952 11 N -0.336 5.336 12 C -0.080 4.080 13 C -0.174 4.174 14 C -0.075 4.075 15 H 0.109 0.891 16 C -0.084 4.084 17 C -0.099 4.099 18 C -0.197 4.197 19 C -0.089 4.089 20 N -0.217 5.217 21 C -0.083 4.083 22 H 0.071 0.929 23 H 0.144 0.856 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.150 0.850 29 H 0.170 0.830 30 H 0.192 0.808 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.122 -7.449 -2.397 11.278 hybrid contribution -1.029 0.882 -1.058 1.719 sum 7.093 -6.567 -3.455 10.265 Atomic orbital electron populations 1.70058 1.08104 1.27683 1.52401 1.25791 0.95212 1.02605 0.94087 0.85691 0.78691 0.78843 0.78979 1.19243 1.24314 1.17765 1.22121 0.91221 0.94332 1.49579 0.91091 1.20092 0.92867 0.89423 0.90773 0.95201 1.62210 1.25607 1.35792 1.09953 1.22888 0.98262 0.89779 0.97095 1.23178 1.01439 0.98754 0.93993 1.21277 0.95470 0.93230 0.97509 0.89145 1.20567 0.97546 0.95577 0.94706 1.21616 0.93469 0.94188 1.00603 1.22349 0.99969 0.99298 0.98041 1.23042 0.96626 0.98921 0.90358 1.67575 1.04212 1.11347 1.38589 1.22702 0.97054 0.94389 0.94201 0.92912 0.85557 0.90958 0.89893 0.89016 0.91683 0.84983 0.83000 0.80756 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 2 C 0.02 1.22 5.33 84.65 0.45 1.67 16 3 Si 0.95 45.67 25.09 68.60 1.72 47.39 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 6 H -0.25 -11.96 6.63 99.48 0.66 -11.30 16 7 C -0.53 -28.11 8.42 25.60 0.22 -27.89 16 8 H 0.07 4.00 4.58 -2.91 -0.01 3.98 16 9 C 0.18 7.72 2.74 44.51 0.12 7.84 16 10 H 0.03 1.42 7.41 -2.39 -0.02 1.40 16 11 N -0.70 -28.27 5.81 -486.20 -2.83 -31.09 16 12 C 0.05 1.48 7.57 86.77 0.66 2.13 16 13 C -0.14 -4.01 6.28 31.98 0.20 -3.81 16 14 C -0.05 -1.93 3.11 -10.35 -0.03 -1.97 16 15 H 0.09 2.84 8.12 -2.39 -0.02 2.83 16 16 C -0.08 -3.06 3.64 -19.77 -0.07 -3.13 16 17 C -0.07 -2.66 7.15 22.47 0.16 -2.49 16 18 C -0.18 -5.85 10.11 22.36 0.23 -5.62 16 19 C 0.07 2.26 11.18 84.69 0.95 3.21 16 20 N -0.51 -19.20 10.36 -195.84 -2.03 -21.23 16 21 C 0.07 2.72 10.88 84.67 0.92 3.64 16 22 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 23 H 0.33 14.19 6.25 -89.69 -0.56 13.63 16 24 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.06 2.04 5.64 -2.39 -0.01 2.03 16 28 H 0.13 4.66 5.91 -2.91 -0.02 4.64 16 29 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.18 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.16 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -64.52 247.28 1.49 -63.02 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.53 Total: 25.37 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 3.80 Total: -26.42 kcal Atomic # 7 Polarization: -104.81 SS G_CDS: -4.56 Total: -109.36 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.72 Total: 47.39 kcal Total: -64.52 1.49 -63.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267265.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.638 kcal (2) G-P(sol) polarization free energy of solvation -64.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds