Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08999 * 110.63465 * 300.98210 * 9 7 2 11 11 C 1.55146 * 110.70633 * 64.08695 * 9 7 2 12 12 C 1.55105 * 101.56222 * 153.90171 * 11 9 7 13 13 N 1.47843 * 104.90744 * 323.16148 * 12 11 9 14 14 C 1.39004 * 111.00148 * 146.23950 * 13 12 11 15 15 C 1.39137 * 119.70787 * 59.15810 * 14 13 12 16 16 C 1.38300 * 119.09807 * 180.02562 * 15 14 13 17 17 C 1.38883 * 118.50339 * 359.97438 * 16 15 14 18 18 C 1.38021 * 119.33535 * 0.02562 * 17 16 15 19 19 N 1.31977 * 120.84858 * 359.72579 * 18 17 16 20 20 C 1.47447 * 108.56838 * 23.96941 * 13 12 11 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08994 * 110.98752 * 272.13217 * 11 9 7 23 23 H 1.09007 * 110.98704 * 35.94203 * 11 9 7 24 24 H 1.09001 * 110.42669 * 204.23837 * 12 11 9 25 25 H 1.09007 * 110.30876 * 82.01655 * 12 11 9 26 26 H 1.07998 * 120.44783 * 0.02562 * 15 14 13 27 27 H 1.07993 * 120.75037 * 180.02562 * 16 15 14 28 28 H 1.08002 * 120.33109 * 180.02562 * 17 16 15 29 29 H 1.07990 * 119.57677 * 179.97438 * 18 17 16 30 30 H 1.08994 * 109.89161 * 239.60696 * 20 13 12 31 31 H 1.08997 * 110.02443 * 118.49270 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6081 -2.5674 0.8828 11 6 0.4220 -2.6597 -1.2961 12 6 0.3216 -4.2032 -1.4122 13 7 1.6286 -4.7060 -0.9382 14 6 1.4858 -5.9227 -0.2813 15 6 0.9370 -7.0096 -0.9545 16 6 0.8002 -8.2140 -0.2885 17 6 1.2190 -8.2916 1.0334 18 6 1.7547 -7.1735 1.6398 19 7 1.8777 -6.0382 0.9781 20 6 2.2274 -3.6929 -0.0499 21 1 -0.4850 0.8400 0.0004 22 1 -0.5643 -2.2083 -1.1888 23 1 0.9515 -2.2387 -2.1508 24 1 0.1552 -4.4967 -2.4487 25 1 -0.4819 -4.5788 -0.7785 26 1 0.6221 -6.9141 -1.9831 27 1 0.3781 -9.0749 -0.7854 28 1 1.1263 -9.2177 1.5814 29 1 2.0812 -7.2294 2.6676 30 1 3.1874 -3.3686 -0.4515 31 1 2.3643 -4.1066 0.9491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261268584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = 48.056529 kcal Electronic energy + Delta-G solvation = -14345.279699 eV Core-core repulsion = 12012.758956 eV Total energy + Delta-G solvation = -2332.520743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.26536 -37.56534 -33.32269 -32.24540 -31.19628 -28.50758 -28.19384 -24.72053 -23.04721 -22.51213 -20.25132 -19.47042 -17.21305 -16.55441 -15.84148 -15.58192 -14.63198 -14.29937 -14.13367 -13.58791 -13.05672 -12.63187 -12.29625 -11.98259 -11.74888 -11.36220 -11.03741 -10.78386 -10.71754 -10.40166 -9.73501 -9.70603 -9.46054 -9.14894 -8.92007 -8.86733 -8.37651 -7.56399 -6.01971 -4.04481 1.41665 1.53753 3.33806 3.37886 3.41073 3.95770 4.32093 4.44515 4.80936 5.01528 5.30449 5.31053 5.39037 5.44827 5.81344 5.91724 5.94176 6.12374 6.20390 6.35009 6.45594 6.56571 6.77854 6.98652 7.10311 7.19485 7.31535 7.59296 7.77012 7.86859 7.99250 8.35955 8.43675 8.96936 9.59492 11.08165 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.061162 B = 0.006821 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.694363 B = 4104.008253 C = 4319.381810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.038 3.962 10 H 0.032 0.968 11 C -0.105 4.105 12 C 0.047 3.953 13 N -0.477 5.477 14 C 0.325 3.675 15 C -0.194 4.194 16 C -0.057 4.057 17 C -0.220 4.220 18 C 0.125 3.875 19 N -0.518 5.518 20 C 0.034 3.966 21 H 0.261 0.739 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 -13.340 -0.556 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.018 3.982 10 H 0.050 0.950 11 C -0.143 4.143 12 C -0.078 4.078 13 N -0.193 5.193 14 C 0.092 3.908 15 C -0.217 4.217 16 C -0.083 4.083 17 C -0.242 4.242 18 C -0.033 4.033 19 N -0.232 5.232 20 C -0.092 4.092 21 H 0.070 0.930 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.168 0.832 30 H 0.088 0.912 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.423 -12.488 -0.616 12.510 hybrid contribution -0.316 0.206 0.112 0.393 sum 0.108 -12.283 -0.504 12.293 Atomic orbital electron populations 1.69942 1.05940 1.26667 1.50484 1.24973 0.94860 0.99101 0.94977 0.86643 0.79576 0.83026 0.78667 1.20221 1.21358 1.20256 1.21024 0.92816 0.90058 1.50898 0.92411 1.19791 0.92655 0.92087 0.93641 0.95035 1.22741 1.02070 0.88924 1.00611 1.23258 0.86757 0.98896 0.98932 1.60706 1.22008 1.02150 1.34438 1.20243 0.90079 0.93030 0.87437 1.21553 1.05540 0.93094 1.01523 1.21363 0.95651 0.97025 0.94306 1.21867 1.05453 1.00380 0.96497 1.22556 0.93712 0.87708 0.99319 1.67637 1.21280 1.26660 1.07670 1.23228 0.99080 0.90920 0.95939 0.92974 0.90432 0.92064 0.91188 0.93903 0.85037 0.85316 0.85500 0.83211 0.91224 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 12.29 55.43 0.68 -24.92 16 2 C 0.06 1.74 5.35 -17.82 -0.10 1.64 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.13 8.48 -34.44 -0.29 -14.42 16 8 H 0.06 1.58 7.55 -52.49 -0.40 1.19 16 9 C 0.04 0.96 2.81 -89.94 -0.25 0.71 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.10 -2.45 5.86 -24.48 -0.14 -2.59 16 12 C 0.05 0.91 6.09 -2.19 -0.01 0.90 16 13 N -0.48 -9.73 5.20 -169.86 -0.88 -10.61 16 14 C 0.32 6.04 6.15 -155.02 -0.95 5.09 16 15 C -0.19 -2.95 9.38 -39.23 -0.37 -3.32 16 16 C -0.06 -0.72 10.17 -39.32 -0.40 -1.12 16 17 C -0.22 -2.70 10.10 -39.42 -0.40 -3.10 16 18 C 0.13 1.82 11.17 -17.57 -0.20 1.62 16 19 N -0.52 -9.62 7.95 -12.44 -0.10 -9.71 16 20 C 0.03 0.77 6.35 -2.83 -0.02 0.76 16 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 22 H 0.08 1.91 7.64 -51.93 -0.40 1.51 16 23 H 0.06 1.47 8.04 -51.93 -0.42 1.05 16 24 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.83 7.78 -51.93 -0.40 0.42 16 26 H 0.13 1.79 7.98 -52.49 -0.42 1.37 16 27 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.07 1.62 7.64 -51.93 -0.40 1.23 16 31 H 0.08 1.92 5.92 -51.93 -0.31 1.62 16 LS Contribution 259.53 15.07 3.91 3.91 Total: -1.00 -29.80 259.53 -8.53 -38.33 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.99 Total: 0.47 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -3.13 Total: -13.83 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.30 Total: -45.24 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.80 -8.53 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.384 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds