Wall clock time and date at job start Mon Mar 30 2020 02:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08999 * 110.63465 * 300.98210 * 9 7 2 11 11 C 1.55146 * 110.70633 * 64.08695 * 9 7 2 12 12 C 1.55105 * 101.56222 * 153.90171 * 11 9 7 13 13 N 1.47843 * 104.90744 * 323.16148 * 12 11 9 14 14 C 1.39004 * 111.00148 * 146.23950 * 13 12 11 15 15 C 1.39137 * 119.70787 * 59.15810 * 14 13 12 16 16 C 1.38300 * 119.09807 * 180.02562 * 15 14 13 17 17 C 1.38883 * 118.50339 * 359.97438 * 16 15 14 18 18 C 1.38021 * 119.33535 * 0.02562 * 17 16 15 19 19 N 1.31977 * 120.84858 * 359.72579 * 18 17 16 20 20 C 1.47447 * 108.56838 * 23.96941 * 13 12 11 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08994 * 110.98752 * 272.13217 * 11 9 7 23 23 H 1.09007 * 110.98704 * 35.94203 * 11 9 7 24 24 H 1.09001 * 110.42669 * 204.23837 * 12 11 9 25 25 H 1.09007 * 110.30876 * 82.01655 * 12 11 9 26 26 H 1.07998 * 120.44783 * 0.02562 * 15 14 13 27 27 H 1.07993 * 120.75037 * 180.02562 * 16 15 14 28 28 H 1.08002 * 120.33109 * 180.02562 * 17 16 15 29 29 H 1.07990 * 119.57677 * 179.97438 * 18 17 16 30 30 H 1.08994 * 109.89161 * 239.60696 * 20 13 12 31 31 H 1.08997 * 110.02443 * 118.49270 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6081 -2.5674 0.8828 11 6 0.4220 -2.6597 -1.2961 12 6 0.3216 -4.2032 -1.4122 13 7 1.6286 -4.7060 -0.9382 14 6 1.4858 -5.9227 -0.2813 15 6 0.9370 -7.0096 -0.9545 16 6 0.8002 -8.2140 -0.2885 17 6 1.2190 -8.2916 1.0334 18 6 1.7547 -7.1735 1.6398 19 7 1.8777 -6.0382 0.9781 20 6 2.2274 -3.6929 -0.0499 21 1 -0.4850 0.8400 0.0004 22 1 -0.5643 -2.2083 -1.1888 23 1 0.9515 -2.2387 -2.1508 24 1 0.1552 -4.4967 -2.4487 25 1 -0.4819 -4.5788 -0.7785 26 1 0.6221 -6.9141 -1.9831 27 1 0.3781 -9.0749 -0.7854 28 1 1.1263 -9.2177 1.5814 29 1 2.0812 -7.2294 2.6676 30 1 3.1874 -3.3686 -0.4515 31 1 2.3643 -4.1066 0.9491 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261268584.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:13 Heat of formation + Delta-G solvation = 29.754626 kcal Electronic energy + Delta-G solvation = -14346.073329 eV Core-core repulsion = 12012.758956 eV Total energy + Delta-G solvation = -2333.314373 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.56641 -39.09996 -35.23402 -33.42118 -32.86743 -30.20297 -29.73587 -26.64750 -24.26035 -23.93650 -21.83956 -21.30973 -18.61836 -18.52295 -17.18658 -16.71279 -16.57553 -15.74437 -15.57889 -15.05800 -14.45567 -14.24585 -13.89071 -13.54628 -13.36186 -13.03513 -12.74204 -12.64019 -12.54342 -12.24717 -11.61898 -11.27409 -10.97295 -10.84403 -10.59398 -10.51637 -10.17521 -8.97556 -8.15813 -6.26063 0.27114 0.45914 1.41714 1.43629 1.51353 2.42264 2.70507 3.05140 3.15472 3.59263 3.99204 4.08597 4.24407 4.28559 4.34091 4.40449 4.53171 4.65319 4.76898 4.89678 5.07098 5.11306 5.19921 5.28793 5.34802 5.52172 5.63057 5.76498 5.82785 5.91507 6.28778 6.36086 6.80874 7.17902 7.41371 8.93802 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.061162 B = 0.006821 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.694363 B = 4104.008253 C = 4319.381810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.032 3.968 10 H -0.006 1.006 11 C -0.097 4.097 12 C 0.060 3.940 13 N -0.481 5.481 14 C 0.283 3.717 15 C -0.195 4.195 16 C -0.051 4.051 17 C -0.199 4.199 18 C 0.104 3.896 19 N -0.558 5.558 20 C 0.050 3.950 21 H 0.262 0.738 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.102 0.898 25 H 0.042 0.958 26 H 0.146 0.854 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.057 0.943 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 -15.502 -0.899 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.072 0.928 9 C 0.013 3.987 10 H 0.012 0.988 11 C -0.136 4.136 12 C -0.065 4.065 13 N -0.198 5.198 14 C 0.052 3.948 15 C -0.217 4.217 16 C -0.077 4.077 17 C -0.219 4.219 18 C -0.053 4.053 19 N -0.273 5.273 20 C -0.077 4.077 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.120 0.880 25 H 0.061 0.939 26 H 0.164 0.836 27 H 0.190 0.810 28 H 0.187 0.813 29 H 0.190 0.810 30 H 0.075 0.925 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.437 -14.687 -0.951 14.724 hybrid contribution -0.353 0.709 0.323 0.855 sum 0.083 -13.978 -0.628 13.992 Atomic orbital electron populations 1.70065 1.07275 1.27529 1.50951 1.25768 0.95732 1.02502 0.94445 0.85598 0.78378 0.78696 0.78915 1.19423 1.20710 1.19735 1.21348 0.92905 0.91489 1.51317 0.92803 1.19712 0.93025 0.92817 0.93192 0.98769 1.22493 1.00171 0.92070 0.98827 1.23145 0.86936 0.95644 1.00768 1.60780 1.22182 1.02297 1.34580 1.20379 0.93177 0.92937 0.88314 1.21782 1.04692 0.93038 1.02234 1.21892 0.94302 0.97161 0.94339 1.22357 1.02220 1.00857 0.96513 1.23082 0.94315 0.87571 1.00363 1.67480 1.22325 1.29167 1.08348 1.22851 0.97888 0.90642 0.96327 0.92866 0.92465 0.93186 0.88004 0.93948 0.83615 0.81025 0.81338 0.81031 0.92466 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.23 12.29 21.45 0.26 -53.96 16 2 C 0.01 0.83 5.35 84.65 0.45 1.28 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -30.62 8.48 25.60 0.22 -30.41 16 8 H 0.05 3.05 7.55 -2.91 -0.02 3.03 16 9 C 0.03 1.71 2.81 -10.36 -0.03 1.68 16 10 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 11 C -0.10 -4.69 5.86 32.05 0.19 -4.50 16 12 C 0.06 2.36 6.09 86.84 0.53 2.89 16 13 N -0.48 -19.82 5.20 -691.33 -3.60 -23.41 16 14 C 0.28 10.36 6.15 133.06 0.82 11.18 16 15 C -0.19 -5.41 9.38 22.50 0.21 -5.20 16 16 C -0.05 -1.05 10.17 22.44 0.23 -0.82 16 17 C -0.20 -4.03 10.10 22.37 0.23 -3.80 16 18 C 0.10 2.81 11.17 84.62 0.95 3.76 16 19 N -0.56 -20.61 7.95 -193.27 -1.54 -22.15 16 20 C 0.05 2.36 6.35 86.65 0.55 2.91 16 21 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 22 H 0.06 2.95 7.64 -2.39 -0.02 2.93 16 23 H 0.05 2.48 8.04 -2.38 -0.02 2.46 16 24 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 25 H 0.04 1.64 7.78 -2.38 -0.02 1.62 16 26 H 0.15 3.53 7.98 -2.91 -0.02 3.50 16 27 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.17 3.62 8.06 -2.92 -0.02 3.60 16 30 H 0.06 2.79 7.64 -2.39 -0.02 2.77 16 31 H 0.08 3.71 5.92 -2.39 -0.01 3.69 16 Total: -1.00 -67.17 259.53 2.60 -64.57 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.11 Total: 9.48 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 4.34 Total: -21.04 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -4.87 Total: -99.52 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.17 2.60 -64.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261268584.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.325 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds