Wall clock time and date at job start Mon Mar 30 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99801 * 2 1 4 4 H 1.48497 * 109.47206 * 274.99062 * 3 2 1 5 5 H 1.48504 * 109.47560 * 34.99327 * 3 2 1 6 6 H 1.48501 * 109.47161 * 154.99104 * 3 2 1 7 7 C 1.37869 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99851 * 175.28086 * 7 2 1 9 9 C 1.50694 * 120.00179 * 355.56257 * 7 2 1 10 10 H 1.09008 * 109.90892 * 302.34313 * 9 7 2 11 11 N 1.47900 * 109.92073 * 63.44807 * 9 7 2 12 12 C 1.48530 * 105.82198 * 144.68372 * 11 9 7 13 13 C 1.54932 * 103.22939 * 320.79488 * 12 11 9 14 14 C 1.54000 * 109.92088 * 181.03953 * 9 7 2 15 15 H 1.08993 * 110.31093 * 120.50123 * 14 9 7 16 16 C 1.50703 * 110.30441 * 358.33580 * 14 9 7 17 17 C 1.38229 * 119.61743 * 276.84578 * 16 14 9 18 18 C 1.38630 * 119.16088 * 179.97438 * 17 16 14 19 19 C 1.38671 * 118.42126 * 359.97438 * 18 17 16 20 20 C 1.38183 * 119.16122 * 0.02562 * 19 18 17 21 21 N 1.31853 * 119.61879 * 96.57153 * 16 14 9 22 22 H 0.97007 * 119.99823 * 359.97438 * 1 2 3 23 23 H 1.00902 * 110.99723 * 265.20115 * 11 9 7 24 24 H 1.09001 * 110.66770 * 79.22960 * 12 11 9 25 25 H 1.09001 * 110.66791 * 202.35546 * 12 11 9 26 26 H 1.08996 * 110.72521 * 155.77281 * 13 12 11 27 27 H 1.09007 * 110.72405 * 278.87924 * 13 12 11 28 28 H 1.08000 * 120.42421 * 359.95432 * 17 16 14 29 29 H 1.07995 * 120.79091 * 180.02562 * 18 17 16 30 30 H 1.07992 * 120.42122 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.61425 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5034 2.6200 0.8029 6 1 3.5955 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0764 9 6 1.2545 -2.4970 0.1021 10 1 0.6536 -2.5096 1.0115 11 7 0.3828 -2.6702 -1.0801 12 6 0.3901 -4.1251 -1.3791 13 6 1.8619 -4.5332 -1.1187 14 6 2.2469 -3.6746 0.1080 15 1 2.1400 -4.2549 1.0244 16 6 3.6596 -3.1686 -0.0303 17 6 4.1637 -2.8844 -1.2857 18 6 5.4643 -2.4189 -1.4018 19 6 6.2126 -2.2555 -0.2458 20 6 5.6411 -2.5603 0.9748 21 7 4.3988 -2.9969 1.0480 22 1 -0.4850 0.8401 0.0004 23 1 -0.5532 -2.3448 -0.8900 24 1 -0.2818 -4.6593 -0.7073 25 1 0.1191 -4.3055 -2.4193 26 1 1.9319 -5.5951 -0.8835 27 1 2.4879 -4.2875 -1.9766 28 1 3.5522 -3.0235 -2.1649 29 1 5.8846 -2.1883 -2.3696 30 1 7.2290 -1.8945 -0.2988 31 1 6.2174 -2.4361 1.8798 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281469.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:15 Heat of formation + Delta-G solvation = 46.485593 kcal Electronic energy + Delta-G solvation = -14875.580749 eV Core-core repulsion = 12542.991885 eV Total energy + Delta-G solvation = -2332.588864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.83989 -37.16607 -32.42011 -31.94786 -31.43006 -28.48890 -27.76487 -24.43370 -22.91803 -22.28181 -20.28418 -19.09445 -16.79985 -15.98658 -15.74261 -15.15231 -14.60290 -14.31295 -13.96089 -13.23663 -12.76301 -12.49651 -12.10417 -11.74134 -11.42543 -11.29969 -10.92884 -10.83495 -10.53643 -10.41501 -10.12085 -9.45283 -9.33198 -9.15626 -8.67690 -8.40171 -7.99807 -6.95701 -5.96658 -3.95831 1.83833 1.97183 3.34320 3.40891 3.46012 4.49504 4.50756 4.92031 5.22045 5.35373 5.40750 5.63905 5.65908 5.68220 5.82267 5.86729 6.11814 6.21115 6.30183 6.38029 6.50767 6.55043 6.70970 6.74030 6.84707 6.92313 7.30662 7.43943 7.98496 8.17218 8.51923 8.75998 8.87568 9.06177 9.69566 11.15216 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.016020 C = 0.010292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.947228 B = 1747.363327 C = 2719.898266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.495 4.495 8 H 0.064 0.936 9 C 0.215 3.785 10 H 0.011 0.989 11 N -0.648 5.648 12 C 0.029 3.971 13 C -0.119 4.119 14 C -0.053 4.053 15 H 0.072 0.928 16 C 0.204 3.796 17 C -0.157 4.157 18 C -0.084 4.084 19 C -0.202 4.202 20 C 0.094 3.906 21 N -0.489 5.489 22 H 0.258 0.742 23 H 0.337 0.663 24 H 0.019 0.981 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 -6.553 -2.192 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.129 4.129 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.108 3.892 10 H 0.029 0.971 11 N -0.279 5.279 12 C -0.101 4.101 13 C -0.157 4.157 14 C -0.073 4.073 15 H 0.090 0.910 16 C 0.067 3.933 17 C -0.176 4.176 18 C -0.109 4.109 19 C -0.222 4.222 20 C -0.062 4.062 21 N -0.198 5.198 22 H 0.068 0.932 23 H 0.154 0.846 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.154 0.846 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.882 -6.407 -1.862 9.585 hybrid contribution 0.260 1.028 -0.113 1.066 sum 7.142 -5.380 -1.975 9.157 Atomic orbital electron populations 1.69874 1.05886 1.26332 1.50576 1.24900 0.94694 0.98811 0.94534 0.86683 0.80076 0.84028 0.77856 1.20810 1.21313 1.20077 1.21228 0.92798 0.89697 1.49691 0.91780 1.19705 0.89177 0.91600 0.88749 0.97098 1.63516 1.15343 1.09123 1.39965 1.23006 0.94817 0.93108 0.99195 1.22666 0.97390 0.97580 0.98098 1.21151 0.90658 0.97886 0.97623 0.91003 1.20779 0.94265 0.90350 0.87934 1.21936 0.95446 1.00649 0.99589 1.21429 0.94356 0.96768 0.98395 1.21879 1.01115 1.05016 0.94165 1.22533 0.91556 0.95323 0.96833 1.67475 1.05657 1.13783 1.32924 0.93222 0.84577 0.96233 0.91982 0.92585 0.90682 0.84648 0.85871 0.86048 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 12.41 55.43 0.69 -24.81 16 2 C 0.07 2.06 5.42 -17.82 -0.10 1.97 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.50 -13.65 7.96 -34.45 -0.27 -13.92 16 8 H 0.06 1.78 4.79 -52.49 -0.25 1.53 16 9 C 0.22 5.38 3.12 -67.80 -0.21 5.17 16 10 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 11 N -0.65 -15.21 6.74 -104.34 -0.70 -15.91 16 12 C 0.03 0.54 7.55 -1.90 -0.01 0.53 16 13 C -0.12 -2.14 6.45 -24.87 -0.16 -2.30 16 14 C -0.05 -1.13 3.37 -90.41 -0.31 -1.43 16 15 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 16 C 0.20 4.32 3.63 -82.59 -0.30 4.02 16 17 C -0.16 -3.03 7.83 -39.44 -0.31 -3.33 16 18 C -0.08 -1.41 10.18 -39.28 -0.40 -1.81 16 19 C -0.20 -3.26 10.11 -39.44 -0.40 -3.66 16 20 C 0.09 1.68 11.18 -17.55 -0.20 1.49 16 21 N -0.49 -10.34 10.21 -9.47 -0.10 -10.43 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.34 8.25 8.32 -39.29 -0.33 7.92 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.31 5.39 -51.93 -0.28 1.03 16 28 H 0.14 2.54 6.12 -52.49 -0.32 2.22 16 29 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.14 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 254.85 15.07 3.84 3.84 Total: -1.00 -30.16 254.85 -7.66 -37.82 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.70 Total: 5.64 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.67 Total: -13.28 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.11 Total: -51.16 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.16 -7.66 -37.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281469.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.303 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds