Wall clock time and date at job start Mon Mar 30 2020 02:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99801 * 2 1 4 4 H 1.48497 * 109.47206 * 274.99062 * 3 2 1 5 5 H 1.48504 * 109.47560 * 34.99327 * 3 2 1 6 6 H 1.48501 * 109.47161 * 154.99104 * 3 2 1 7 7 C 1.37869 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99851 * 175.28086 * 7 2 1 9 9 C 1.50694 * 120.00179 * 355.56257 * 7 2 1 10 10 H 1.09008 * 109.90892 * 302.34313 * 9 7 2 11 11 N 1.47900 * 109.92073 * 63.44807 * 9 7 2 12 12 C 1.48530 * 105.82198 * 144.68372 * 11 9 7 13 13 C 1.54932 * 103.22939 * 320.79488 * 12 11 9 14 14 C 1.54000 * 109.92088 * 181.03953 * 9 7 2 15 15 H 1.08993 * 110.31093 * 120.50123 * 14 9 7 16 16 C 1.50703 * 110.30441 * 358.33580 * 14 9 7 17 17 C 1.38229 * 119.61743 * 276.84578 * 16 14 9 18 18 C 1.38630 * 119.16088 * 179.97438 * 17 16 14 19 19 C 1.38671 * 118.42126 * 359.97438 * 18 17 16 20 20 C 1.38183 * 119.16122 * 0.02562 * 19 18 17 21 21 N 1.31853 * 119.61879 * 96.57153 * 16 14 9 22 22 H 0.97007 * 119.99823 * 359.97438 * 1 2 3 23 23 H 1.00902 * 110.99723 * 265.20115 * 11 9 7 24 24 H 1.09001 * 110.66770 * 79.22960 * 12 11 9 25 25 H 1.09001 * 110.66791 * 202.35546 * 12 11 9 26 26 H 1.08996 * 110.72521 * 155.77281 * 13 12 11 27 27 H 1.09007 * 110.72405 * 278.87924 * 13 12 11 28 28 H 1.08000 * 120.42421 * 359.95432 * 17 16 14 29 29 H 1.07995 * 120.79091 * 180.02562 * 18 17 16 30 30 H 1.07992 * 120.42122 * 180.02562 * 19 18 17 31 31 H 1.07999 * 119.61425 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1073 -1.3947 5 1 1.5034 2.6200 0.8029 6 1 3.5955 1.4121 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0818 -1.1956 -0.0764 9 6 1.2545 -2.4970 0.1021 10 1 0.6536 -2.5096 1.0115 11 7 0.3828 -2.6702 -1.0801 12 6 0.3901 -4.1251 -1.3791 13 6 1.8619 -4.5332 -1.1187 14 6 2.2469 -3.6746 0.1080 15 1 2.1400 -4.2549 1.0244 16 6 3.6596 -3.1686 -0.0303 17 6 4.1637 -2.8844 -1.2857 18 6 5.4643 -2.4189 -1.4018 19 6 6.2126 -2.2555 -0.2458 20 6 5.6411 -2.5603 0.9748 21 7 4.3988 -2.9969 1.0480 22 1 -0.4850 0.8401 0.0004 23 1 -0.5532 -2.3448 -0.8900 24 1 -0.2818 -4.6593 -0.7073 25 1 0.1191 -4.3055 -2.4193 26 1 1.9319 -5.5951 -0.8835 27 1 2.4879 -4.2875 -1.9766 28 1 3.5522 -3.0235 -2.1649 29 1 5.8846 -2.1883 -2.3696 30 1 7.2290 -1.8945 -0.2988 31 1 6.2174 -2.4361 1.8798 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281469.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:15 Heat of formation + Delta-G solvation = 25.644837 kcal Electronic energy + Delta-G solvation = -14876.484472 eV Core-core repulsion = 12542.991885 eV Total energy + Delta-G solvation = -2333.492587 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.30281 -38.79449 -34.47771 -33.36344 -32.92232 -30.24973 -29.36502 -26.36175 -24.32014 -23.78533 -21.92360 -20.76383 -18.57841 -17.57672 -17.35637 -16.77497 -16.31023 -15.96076 -15.48056 -14.82299 -14.41488 -14.08846 -13.73301 -13.39894 -13.17097 -12.88361 -12.82156 -12.47414 -12.35622 -11.98701 -11.67789 -11.37169 -11.18427 -10.60818 -10.50550 -10.11318 -9.46816 -8.81380 -8.07811 -6.11693 0.44637 0.60652 1.35912 1.37240 1.46467 2.44078 3.07349 3.20190 3.51267 3.87731 4.05543 4.15336 4.21866 4.32263 4.40578 4.45916 4.50855 4.72056 4.83735 4.92933 5.02288 5.10648 5.18324 5.26775 5.31242 5.47430 5.56374 5.83622 6.03591 6.26236 6.55051 6.95374 7.01939 7.34052 7.55338 9.03055 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.020614 B = 0.016020 C = 0.010292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.947228 B = 1747.363327 C = 2719.898266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.022 3.978 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.214 3.786 10 H -0.032 1.032 11 N -0.661 5.661 12 C 0.029 3.971 13 C -0.108 4.108 14 C -0.053 4.053 15 H 0.064 0.936 16 C 0.177 3.823 17 C -0.172 4.172 18 C -0.084 4.084 19 C -0.191 4.191 20 C 0.078 3.922 21 N -0.525 5.525 22 H 0.257 0.743 23 H 0.326 0.674 24 H 0.029 0.971 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.981 -6.769 -3.288 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.105 3.895 10 H -0.014 1.014 11 N -0.291 5.291 12 C -0.100 4.100 13 C -0.146 4.146 14 C -0.073 4.073 15 H 0.082 0.918 16 C 0.040 3.960 17 C -0.191 4.191 18 C -0.110 4.110 19 C -0.210 4.210 20 C -0.078 4.078 21 N -0.234 5.234 22 H 0.066 0.934 23 H 0.141 0.859 24 H 0.048 0.952 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.153 0.847 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.967 -6.638 -2.969 11.545 hybrid contribution -0.316 1.054 0.259 1.131 sum 8.651 -5.584 -2.710 10.647 Atomic orbital electron populations 1.69987 1.06863 1.26688 1.51855 1.25606 0.95515 1.01701 0.94945 0.85821 0.78743 0.80818 0.77896 1.20249 1.21075 1.20220 1.21530 0.92945 0.90860 1.48554 0.92012 1.19550 0.89667 0.92707 0.87534 1.01418 1.63379 1.14379 1.12522 1.38804 1.23133 0.95911 0.90319 1.00653 1.22656 0.96426 0.98707 0.96839 1.21037 0.90613 0.96755 0.98888 0.91789 1.20742 0.94191 0.92236 0.88881 1.22030 0.96842 1.01458 0.98792 1.21896 0.93361 0.95297 1.00406 1.22341 1.02709 1.02944 0.93053 1.23130 0.90852 0.94851 0.99009 1.67417 1.07359 1.15084 1.33578 0.93434 0.85871 0.95232 0.89726 0.89571 0.89940 0.84674 0.82403 0.81933 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.69 12.41 21.45 0.27 -53.43 16 2 C 0.02 1.24 5.42 84.65 0.46 1.70 16 3 Si 0.94 45.70 29.54 68.60 2.03 47.73 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.50 -27.94 7.96 25.60 0.20 -27.74 16 8 H 0.06 3.44 4.79 -2.91 -0.01 3.43 16 9 C 0.21 10.98 3.12 44.31 0.14 11.12 16 10 H -0.03 -1.85 8.14 -2.38 -0.02 -1.87 16 11 N -0.66 -31.40 6.74 -484.03 -3.26 -34.66 16 12 C 0.03 1.07 7.55 86.65 0.65 1.72 16 13 C -0.11 -3.72 6.45 31.80 0.21 -3.52 16 14 C -0.05 -2.25 3.37 -10.66 -0.04 -2.29 16 15 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 16 C 0.18 7.37 3.63 42.55 0.15 7.52 16 17 C -0.17 -6.35 7.83 22.36 0.17 -6.18 16 18 C -0.08 -2.56 10.18 22.47 0.23 -2.33 16 19 C -0.19 -5.46 10.11 22.36 0.23 -5.24 16 20 C 0.08 2.61 11.18 84.67 0.95 3.56 16 21 N -0.52 -21.86 10.21 -183.88 -1.88 -23.74 16 22 H 0.26 14.48 8.31 -92.70 -0.77 13.71 16 23 H 0.33 16.42 8.32 -89.69 -0.75 15.67 16 24 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.08 2.72 5.39 -2.38 -0.01 2.70 16 28 H 0.14 4.88 6.12 -2.91 -0.02 4.86 16 29 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 31 H 0.17 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -65.98 254.85 0.90 -65.08 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.39 Total: 20.68 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 3.36 Total: -21.67 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -4.87 Total: -111.83 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -65.98 0.90 -65.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281469.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.728 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds