Wall clock time and date at job start Mon Mar 30 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99486 * 2 1 4 4 H 1.48498 * 109.47047 * 269.99891 * 3 2 1 5 5 H 1.48499 * 109.47219 * 30.00352 * 3 2 1 6 6 H 1.48500 * 109.46655 * 150.00326 * 3 2 1 7 7 C 1.37874 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99998 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.91185 * 300.70750 * 9 7 2 11 11 N 1.47901 * 110.07933 * 61.91512 * 9 7 2 12 12 C 1.48531 * 105.82102 * 94.11159 * 11 9 7 13 13 C 1.54934 * 103.22920 * 39.20690 * 12 11 9 14 14 C 1.53995 * 109.91536 * 179.59868 * 9 7 2 15 15 H 1.08992 * 110.31099 * 0.59613 * 14 9 7 16 16 C 1.50704 * 110.30564 * 122.76118 * 14 9 7 17 17 C 1.38225 * 119.61577 * 36.33688 * 16 14 9 18 18 C 1.38640 * 119.15788 * 179.97438 * 17 16 14 19 19 C 1.38666 * 118.41982 * 359.97438 * 18 17 16 20 20 C 1.38185 * 119.16454 * 0.02562 * 19 18 17 21 21 N 1.31848 * 119.61605 * 216.05598 * 16 14 9 22 22 H 0.97000 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99864 * 214.62892 * 11 9 7 24 24 H 1.09001 * 110.66843 * 280.77306 * 12 11 9 25 25 H 1.09004 * 110.81171 * 157.71051 * 12 11 9 26 26 H 1.08992 * 110.72805 * 204.22531 * 13 12 11 27 27 H 1.09005 * 110.72156 * 80.94009 * 13 12 11 28 28 H 1.07997 * 120.42461 * 359.97438 * 17 16 14 29 29 H 1.08002 * 120.78829 * 179.97438 * 18 17 16 30 30 H 1.08004 * 120.42069 * 180.02562 * 19 18 17 31 31 H 1.08003 * 119.61464 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6127 -2.5591 0.8808 11 7 0.4305 -2.6116 -1.2258 12 6 1.2608 -3.3626 -2.2018 13 6 1.9527 -4.4372 -1.3260 14 6 2.2428 -3.6773 -0.0113 15 1 3.2684 -3.3086 -0.0059 16 6 2.0021 -4.5743 1.1755 17 6 0.7106 -4.7886 1.6189 18 6 0.5000 -5.6160 2.7112 19 6 1.6012 -6.1999 3.3189 20 6 2.8630 -5.9391 2.8195 21 7 3.0254 -5.1500 1.7753 22 1 -0.4850 0.8400 -0.0004 23 1 -0.4345 -3.0962 -1.0384 24 1 2.0002 -2.7074 -2.6625 25 1 0.6361 -3.8304 -2.9628 26 1 2.8799 -4.7742 -1.7894 27 1 1.2826 -5.2778 -1.1457 28 1 -0.1239 -4.3175 1.1209 29 1 -0.4980 -5.8014 3.0801 30 1 1.4744 -6.8503 4.1718 31 1 3.7257 -6.3903 3.2869 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261281471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:19 Heat of formation + Delta-G solvation = 38.978358 kcal Electronic energy + Delta-G solvation = -14545.246845 eV Core-core repulsion = 12212.332443 eV Total energy + Delta-G solvation = -2332.914402 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.98343 -37.37921 -32.39140 -32.14670 -31.45858 -28.43112 -27.87761 -24.63303 -23.20738 -22.23051 -20.52670 -19.14441 -16.74938 -16.28088 -15.64458 -15.15079 -14.82087 -14.39870 -13.90522 -13.51929 -12.98187 -12.70730 -12.51104 -11.66362 -11.59160 -11.17214 -10.76489 -10.74728 -10.65112 -10.44029 -10.03626 -9.59871 -9.33920 -9.22821 -8.94980 -8.50840 -8.31016 -7.03396 -5.85054 -3.92841 1.49499 1.63897 3.38530 3.44761 3.48182 4.17566 4.51956 4.71517 5.09301 5.14190 5.30927 5.37963 5.52905 5.62450 5.71745 5.75803 6.01588 6.15680 6.17254 6.30787 6.37322 6.49683 6.56017 6.72440 6.80659 6.91188 7.12205 7.48149 7.96177 8.28337 8.33137 8.43710 8.86453 9.13540 9.73573 11.22676 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.009181 C = 0.008380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.049670 B = 3049.038820 C = 3340.555548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.082 3.918 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.216 3.784 10 H 0.037 0.963 11 N -0.636 5.636 12 C 0.049 3.951 13 C -0.143 4.143 14 C -0.072 4.072 15 H 0.089 0.911 16 C 0.164 3.836 17 C -0.165 4.165 18 C -0.078 4.078 19 C -0.195 4.195 20 C 0.094 3.906 21 N -0.489 5.489 22 H 0.255 0.745 23 H 0.302 0.698 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -10.945 2.807 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.108 3.892 10 H 0.055 0.945 11 N -0.262 5.262 12 C -0.081 4.081 13 C -0.184 4.184 14 C -0.093 4.093 15 H 0.107 0.893 16 C 0.027 3.973 17 C -0.185 4.185 18 C -0.104 4.104 19 C -0.215 4.215 20 C -0.064 4.064 21 N -0.198 5.198 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.402 -9.981 2.243 10.326 hybrid contribution -0.379 -0.228 0.797 0.912 sum 1.022 -10.210 3.040 10.702 Atomic orbital electron populations 1.70003 1.05790 1.25826 1.48273 1.24898 0.94643 0.98539 0.94246 0.86754 0.79980 0.84060 0.78028 1.20716 1.21426 1.20074 1.20975 0.92077 0.89961 1.52401 0.92843 1.19990 0.89278 0.90764 0.89195 0.94479 1.63145 1.04196 1.47774 1.11065 1.23012 0.96720 0.92920 0.95496 1.23158 1.00456 0.98461 0.96282 1.21778 1.04142 0.94689 0.88717 0.89257 1.21570 0.88295 0.92469 0.94972 1.22061 0.98974 0.99355 0.98085 1.21534 0.99111 0.94958 0.94791 1.21980 0.94135 1.03160 1.02227 1.22675 0.96379 0.94614 0.92686 1.67573 1.35391 1.08230 1.08630 0.93482 0.88363 0.90820 0.92952 0.92098 0.92952 0.84628 0.85350 0.85548 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 12.88 55.43 0.71 -24.28 16 2 C 0.08 2.31 5.41 -17.82 -0.10 2.21 16 3 Si 0.88 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.32 8.74 -34.44 -0.30 -14.62 16 8 H 0.05 1.49 7.33 -52.49 -0.38 1.11 16 9 C 0.22 5.26 2.25 -67.80 -0.15 5.10 16 10 H 0.04 0.97 6.09 -51.93 -0.32 0.66 16 11 N -0.64 -14.66 6.61 -104.34 -0.69 -15.34 16 12 C 0.05 0.96 7.53 -1.90 -0.01 0.94 16 13 C -0.14 -2.63 6.59 -24.87 -0.16 -2.80 16 14 C -0.07 -1.53 2.99 -90.41 -0.27 -1.80 16 15 H 0.09 2.05 7.38 -51.93 -0.38 1.67 16 16 C 0.16 3.24 5.67 -82.59 -0.47 2.77 16 17 C -0.16 -2.92 8.69 -39.44 -0.34 -3.26 16 18 C -0.08 -1.14 10.18 -39.28 -0.40 -1.54 16 19 C -0.20 -2.65 10.11 -39.44 -0.40 -3.05 16 20 C 0.09 1.43 11.18 -17.55 -0.20 1.23 16 21 N -0.49 -9.28 10.27 -9.47 -0.10 -9.38 16 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 23 H 0.30 6.45 8.92 -39.29 -0.35 6.10 16 24 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.90 7.83 -51.93 -0.41 0.49 16 28 H 0.14 2.40 6.84 -52.49 -0.36 2.04 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -30.50 261.26 -7.83 -38.33 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.87 Total: 4.86 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -2.80 Total: -14.82 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.07 Total: -49.01 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.50 -7.83 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.312 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds