Wall clock time and date at job start Mon Mar 30 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99486 * 2 1 4 4 H 1.48498 * 109.47047 * 269.99891 * 3 2 1 5 5 H 1.48499 * 109.47219 * 30.00352 * 3 2 1 6 6 H 1.48500 * 109.46655 * 150.00326 * 3 2 1 7 7 C 1.37874 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00041 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99998 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.91185 * 300.70750 * 9 7 2 11 11 N 1.47901 * 110.07933 * 61.91512 * 9 7 2 12 12 C 1.48531 * 105.82102 * 94.11159 * 11 9 7 13 13 C 1.54934 * 103.22920 * 39.20690 * 12 11 9 14 14 C 1.53995 * 109.91536 * 179.59868 * 9 7 2 15 15 H 1.08992 * 110.31099 * 0.59613 * 14 9 7 16 16 C 1.50704 * 110.30564 * 122.76118 * 14 9 7 17 17 C 1.38225 * 119.61577 * 36.33688 * 16 14 9 18 18 C 1.38640 * 119.15788 * 179.97438 * 17 16 14 19 19 C 1.38666 * 118.41982 * 359.97438 * 18 17 16 20 20 C 1.38185 * 119.16454 * 0.02562 * 19 18 17 21 21 N 1.31848 * 119.61605 * 216.05598 * 16 14 9 22 22 H 0.97000 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.00899 * 110.99864 * 214.62892 * 11 9 7 24 24 H 1.09001 * 110.66843 * 280.77306 * 12 11 9 25 25 H 1.09004 * 110.81171 * 157.71051 * 12 11 9 26 26 H 1.08992 * 110.72805 * 204.22531 * 13 12 11 27 27 H 1.09005 * 110.72156 * 80.94009 * 13 12 11 28 28 H 1.07997 * 120.42461 * 359.97438 * 17 16 14 29 29 H 1.08002 * 120.78829 * 179.97438 * 18 17 16 30 30 H 1.08004 * 120.42069 * 180.02562 * 19 18 17 31 31 H 1.08003 * 119.61464 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6127 -2.5591 0.8808 11 7 0.4305 -2.6116 -1.2258 12 6 1.2608 -3.3626 -2.2018 13 6 1.9527 -4.4372 -1.3260 14 6 2.2428 -3.6773 -0.0113 15 1 3.2684 -3.3086 -0.0059 16 6 2.0021 -4.5743 1.1755 17 6 0.7106 -4.7886 1.6189 18 6 0.5000 -5.6160 2.7112 19 6 1.6012 -6.1999 3.3189 20 6 2.8630 -5.9391 2.8195 21 7 3.0254 -5.1500 1.7753 22 1 -0.4850 0.8400 -0.0004 23 1 -0.4345 -3.0962 -1.0384 24 1 2.0002 -2.7074 -2.6625 25 1 0.6361 -3.8304 -2.9628 26 1 2.8799 -4.7742 -1.7894 27 1 1.2826 -5.2778 -1.1457 28 1 -0.1239 -4.3175 1.1209 29 1 -0.4980 -5.8014 3.0801 30 1 1.4744 -6.8503 4.1718 31 1 3.7257 -6.3903 3.2869 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:18 Heat of formation + Delta-G solvation = 17.931308 kcal Electronic energy + Delta-G solvation = -14546.159514 eV Core-core repulsion = 12212.332443 eV Total energy + Delta-G solvation = -2333.827071 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.31928 -38.99567 -34.43403 -33.46199 -32.84528 -30.15594 -29.52727 -26.52164 -24.46047 -23.65175 -22.23469 -20.77783 -18.42938 -17.85801 -17.20477 -16.59061 -16.45857 -16.07856 -15.45318 -14.91304 -14.50545 -14.30722 -13.89196 -13.48556 -13.03183 -12.94322 -12.61563 -12.52173 -12.40955 -12.12895 -11.63058 -11.30572 -11.19526 -10.74318 -10.47517 -10.27753 -9.80087 -8.82499 -7.98344 -6.13000 0.25076 0.43116 1.41441 1.42692 1.51704 2.47544 2.91013 3.22829 3.42542 3.79028 3.97288 4.04958 4.14149 4.27502 4.29289 4.37328 4.53413 4.72132 4.78980 4.85214 4.94917 5.04289 5.11848 5.25112 5.30334 5.34192 5.64063 5.79307 5.88517 6.29552 6.46907 6.93771 7.14418 7.19301 7.56094 9.07209 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.009181 C = 0.008380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.049670 B = 3049.038820 C = 3340.555548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.035 3.965 3 Si 0.942 3.058 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.039 0.961 9 C 0.221 3.779 10 H 0.014 0.986 11 N -0.658 5.658 12 C 0.051 3.949 13 C -0.129 4.129 14 C -0.066 4.066 15 H 0.059 0.941 16 C 0.134 3.866 17 C -0.182 4.182 18 C -0.075 4.075 19 C -0.178 4.178 20 C 0.084 3.916 21 N -0.521 5.521 22 H 0.256 0.744 23 H 0.311 0.689 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -12.522 3.746 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.057 0.943 9 C 0.112 3.888 10 H 0.032 0.968 11 N -0.284 5.284 12 C -0.079 4.079 13 C -0.169 4.169 14 C -0.087 4.087 15 H 0.077 0.923 16 C -0.002 4.002 17 C -0.202 4.202 18 C -0.101 4.101 19 C -0.197 4.197 20 C -0.073 4.073 21 N -0.231 5.231 22 H 0.065 0.935 23 H 0.126 0.874 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.180 0.820 30 H 0.190 0.810 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.313 -11.562 3.171 12.060 hybrid contribution -0.337 0.174 0.591 0.702 sum 0.976 -11.387 3.762 12.032 Atomic orbital electron populations 1.70106 1.06817 1.26430 1.49189 1.25575 0.95501 1.01506 0.94131 0.85830 0.78809 0.80447 0.78052 1.20353 1.20711 1.19951 1.21331 0.91786 0.92075 1.52307 0.94253 1.19723 0.89388 0.90800 0.88855 0.96846 1.62899 1.04971 1.49426 1.11103 1.23008 0.96516 0.92795 0.95557 1.23036 1.01212 0.98087 0.94541 1.21484 1.01210 0.94556 0.91495 0.92272 1.21291 0.89495 0.93940 0.95480 1.22050 0.97798 1.00720 0.99659 1.21962 1.01328 0.93470 0.93321 1.22465 0.92785 1.02046 1.02401 1.23336 0.98661 0.93677 0.91643 1.67488 1.35641 1.09613 1.10340 0.93529 0.87394 0.92613 0.89793 0.90806 0.91401 0.85705 0.81987 0.81028 0.80194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.42 12.88 21.45 0.28 -52.15 16 2 C 0.04 2.02 5.41 84.65 0.46 2.48 16 3 Si 0.94 45.37 29.54 68.60 2.03 47.40 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.54 -30.84 8.74 25.60 0.22 -30.62 16 8 H 0.04 2.30 7.33 -2.91 -0.02 2.28 16 9 C 0.22 11.14 2.25 44.31 0.10 11.24 16 10 H 0.01 0.74 6.09 -2.39 -0.01 0.73 16 11 N -0.66 -30.81 6.61 -484.03 -3.20 -34.01 16 12 C 0.05 1.99 7.53 86.65 0.65 2.64 16 13 C -0.13 -4.70 6.59 31.80 0.21 -4.49 16 14 C -0.07 -2.89 2.99 -10.66 -0.03 -2.92 16 15 H 0.06 2.86 7.38 -2.39 -0.02 2.84 16 16 C 0.13 5.33 5.67 42.55 0.24 5.57 16 17 C -0.18 -6.38 8.69 22.36 0.19 -6.18 16 18 C -0.08 -1.99 10.18 22.47 0.23 -1.76 16 19 C -0.18 -4.11 10.11 22.36 0.23 -3.89 16 20 C 0.08 2.33 11.18 84.67 0.95 3.28 16 21 N -0.52 -19.47 10.27 -183.88 -1.89 -21.36 16 22 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 23 H 0.31 13.46 8.92 -89.69 -0.80 12.66 16 24 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 26 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 27 H 0.07 2.26 7.83 -2.38 -0.02 2.24 16 28 H 0.13 4.51 6.84 -2.91 -0.02 4.50 16 29 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 30 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.18 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -67.45 261.26 0.99 -66.46 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.33 Total: 18.29 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 3.45 Total: -24.63 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -4.81 Total: -107.52 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.45 0.99 -66.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.392 kcal (2) G-P(sol) polarization free energy of solvation -67.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds