Wall clock time and date at job start Mon Mar 30 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.66434 * 2 1 4 4 C 1.54704 * 110.74874 * 236.58104 * 2 1 3 5 5 C 1.51646 * 101.92911 * 216.38968 * 4 2 1 6 6 C 1.38923 * 107.03383 * 15.35950 * 5 4 2 7 7 C 1.39240 * 118.87741 * 181.05743 * 6 5 4 8 8 C 1.37982 * 120.23821 * 359.56233 * 7 6 5 9 9 C 1.38247 * 120.34878 * 0.03840 * 8 7 6 10 10 C 1.37693 * 132.17479 * 195.88330 * 5 4 2 11 11 C 1.50700 * 120.01739 * 359.04414 * 10 5 4 12 12 C 1.50701 * 109.47276 * 84.99777 * 11 10 5 13 13 H 1.08003 * 119.99623 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00126 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00230 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99939 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47341 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47281 * 119.99791 * 16 14 12 19 19 H 1.48502 * 109.47316 * 240.00127 * 16 14 12 20 20 O 1.36137 * 111.22679 * 1.11525 * 6 5 4 21 21 H 1.08993 * 109.47070 * 298.24515 * 1 2 3 22 22 H 1.08997 * 109.46759 * 58.24045 * 1 2 3 23 23 H 1.09000 * 109.47239 * 178.23978 * 1 2 3 24 24 H 1.09004 * 110.93835 * 334.55067 * 4 2 1 25 25 H 1.09000 * 110.93275 * 98.23021 * 4 2 1 26 26 H 1.07998 * 119.88255 * 179.57625 * 7 6 5 27 27 H 1.08003 * 119.82477 * 180.02562 * 8 7 6 28 28 H 1.08006 * 120.11458 * 180.22142 * 9 8 7 29 29 H 1.08996 * 109.47480 * 205.00208 * 11 10 5 30 30 H 1.09002 * 109.46644 * 325.00167 * 11 10 5 31 31 H 0.97002 * 120.00072 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0781 -0.7968 -1.2075 5 6 3.3061 -1.4599 -0.6142 6 6 3.1958 -1.3590 0.7670 7 6 4.2154 -1.8752 1.5625 8 6 5.3094 -2.4833 0.9819 9 6 5.4039 -2.5851 -0.3936 10 6 4.3971 -2.0701 -1.1914 11 6 4.4950 -2.1774 -2.6914 12 6 5.0912 -0.9101 -3.2479 13 1 5.3717 -0.1075 -2.5818 14 6 5.2787 -0.7753 -4.6071 15 7 4.9376 -1.7529 -5.4181 16 14 6.0184 0.7952 -5.2967 17 1 6.3141 1.7332 -4.1841 18 1 7.2743 0.4743 -6.0213 19 1 5.0543 1.4270 -6.2330 20 8 2.0393 -0.7364 1.1249 21 1 -0.3633 0.4863 0.9052 22 1 -0.3633 0.5409 -0.8738 23 1 -0.3634 -1.0272 -0.0316 24 1 1.3565 -1.5419 -1.5424 25 1 2.3524 -0.1279 -2.0233 26 1 4.1496 -1.7995 2.6378 27 1 6.0963 -2.8817 1.6053 28 1 6.2603 -3.0650 -0.8439 29 1 5.1295 -3.0236 -2.9546 30 1 3.4997 -2.3253 -3.1107 31 1 5.0692 -1.6579 -6.3744 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286616.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:23 Heat of formation + Delta-G solvation = -41.468159 kcal Electronic energy + Delta-G solvation = -14341.113947 eV Core-core repulsion = 11972.418371 eV Total energy + Delta-G solvation = -2368.695576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.02554 -38.63207 -35.51226 -34.06330 -32.47347 -31.61108 -28.96817 -27.31199 -25.11605 -23.07722 -22.49976 -21.52817 -18.55021 -18.20988 -17.46509 -16.88209 -16.50652 -16.03306 -14.95237 -14.59078 -14.53283 -14.07268 -13.96805 -13.60740 -13.38918 -13.21156 -13.01755 -12.75242 -12.67380 -12.30109 -12.29257 -11.96029 -11.72395 -11.41761 -11.22519 -10.62826 -9.46670 -9.00044 -8.22071 -6.34954 0.47496 0.56495 1.37460 1.38589 1.51612 2.31574 2.38272 2.90003 3.08920 3.63500 3.68811 4.01752 4.07031 4.27162 4.29416 4.42202 4.57515 4.72343 4.73163 4.80771 4.94357 5.05481 5.20388 5.21449 5.27101 5.36451 5.48530 5.58180 5.72791 5.77707 5.99993 6.14617 6.36913 6.76772 7.33386 8.87678 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.009321 C = 0.007747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.603797 B = 3003.135537 C = 3613.636726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 H 0.090 0.910 4 C -0.102 4.102 5 C -0.194 4.194 6 C 0.087 3.913 7 C -0.160 4.160 8 C -0.077 4.077 9 C -0.167 4.167 10 C -0.023 4.023 11 C 0.060 3.940 12 C -0.522 4.522 13 H 0.051 0.949 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.963 3.037 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.275 1.275 20 O -0.314 6.314 21 H 0.081 0.919 22 H 0.095 0.905 23 H 0.062 0.938 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.149 0.851 27 H 0.164 0.836 28 H 0.124 0.876 29 H 0.004 0.996 30 H 0.003 0.997 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 2.700 11.379 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.021 3.979 3 H 0.108 0.892 4 C -0.139 4.139 5 C -0.195 4.195 6 C 0.042 3.958 7 C -0.179 4.179 8 C -0.095 4.095 9 C -0.185 4.185 10 C -0.024 4.024 11 C 0.023 3.977 12 C -0.560 4.560 13 H 0.069 0.931 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.787 3.213 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.200 1.200 20 O -0.230 6.230 21 H 0.100 0.900 22 H 0.114 0.886 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.167 0.833 27 H 0.182 0.818 28 H 0.142 0.858 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.085 2.664 11.408 12.771 hybrid contribution 0.465 0.469 -1.134 1.312 sum -4.621 3.133 10.274 11.692 Atomic orbital electron populations 1.21872 0.89743 1.03621 1.04399 1.23565 0.97347 0.94989 0.82011 0.89222 1.21783 0.94251 0.99197 0.98700 1.20762 0.98404 1.06092 0.94261 1.19812 0.87696 0.95583 0.92699 1.20450 0.92431 1.04715 1.00287 1.21140 0.97398 0.96985 0.93946 1.21156 0.99269 1.03786 0.94313 1.19772 0.92245 0.93363 0.96978 1.18057 0.95797 0.96423 0.87381 1.21271 1.41333 1.01274 0.92114 0.93114 1.25877 0.95898 1.00011 0.97324 1.70082 1.48834 1.33919 1.03972 0.85426 0.78283 0.79184 0.78358 1.19084 1.20127 1.20032 1.86731 1.34663 1.62959 1.38604 0.90037 0.88617 0.91845 0.89730 0.90254 0.83306 0.81842 0.85812 0.97766 0.97882 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.60 71.98 0.69 -2.31 16 2 C 0.08 2.27 4.26 31.18 0.13 2.40 16 3 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 4 C -0.10 -3.78 6.27 30.73 0.19 -3.59 16 5 C -0.19 -8.19 6.07 -19.53 -0.12 -8.31 16 6 C 0.09 3.24 7.04 22.68 0.16 3.40 16 7 C -0.16 -5.14 10.06 22.45 0.23 -4.92 16 8 C -0.08 -2.43 10.02 22.21 0.22 -2.21 16 9 C -0.17 -6.60 9.70 22.31 0.22 -6.39 16 10 C -0.02 -1.08 5.06 -19.96 -0.10 -1.18 16 11 C 0.06 3.28 4.97 29.10 0.14 3.42 16 12 C -0.52 -29.89 9.09 25.60 0.23 -29.65 16 13 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 14 C 0.01 0.41 5.46 84.65 0.46 0.87 16 15 N -0.93 -55.62 13.29 21.44 0.28 -55.33 16 16 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 O -0.31 -10.73 10.81 -95.11 -1.03 -11.76 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 24 H 0.08 2.99 7.90 -2.38 -0.02 2.98 16 25 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 26 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 27 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 28 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 29 H 0.00 0.23 8.05 -2.39 -0.02 0.21 16 30 H 0.00 0.17 7.94 -2.39 -0.02 0.15 16 31 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -65.82 267.34 4.85 -60.97 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.10 Total: 8.45 kcal Atomic # 6 Polarization: -50.92 SS G_CDS: 2.46 Total: -48.46 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.28 Total: -55.33 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.03 Total: -11.76 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.82 4.85 -60.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286616.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.505 kcal (2) G-P(sol) polarization free energy of solvation -65.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds