Wall clock time and date at job start Mon Mar 30 2020 02:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.66238 * 2 1 4 4 C 1.54709 * 110.74564 * 123.21071 * 2 1 3 5 5 C 1.51644 * 101.91951 * 93.19805 * 4 2 1 6 6 C 1.38929 * 107.03156 * 15.47708 * 5 4 2 7 7 C 1.39242 * 118.87527 * 180.68679 * 6 5 4 8 8 C 1.37979 * 120.23721 * 359.65258 * 7 6 5 9 9 C 1.38239 * 120.35477 * 359.77939 * 8 7 6 10 10 C 1.37693 * 132.17925 * 195.77391 * 5 4 2 11 11 C 1.50696 * 120.01239 * 359.45582 * 10 5 4 12 12 C 1.50706 * 109.47259 * 84.99738 * 11 10 5 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 O 1.36131 * 111.23194 * 0.93875 * 6 5 4 21 21 H 1.08996 * 109.47025 * 296.78974 * 1 2 3 22 22 H 1.08999 * 109.46916 * 56.78859 * 1 2 3 23 23 H 1.08998 * 109.47003 * 176.78551 * 1 2 3 24 24 H 1.08999 * 110.94016 * 335.04337 * 4 2 1 25 25 H 1.09001 * 110.93451 * 211.35403 * 4 2 1 26 26 H 1.07998 * 119.88323 * 179.67754 * 7 6 5 27 27 H 1.08004 * 119.82060 * 180.02562 * 8 7 6 28 28 H 1.08000 * 120.12071 * 180.46870 * 9 8 7 29 29 H 1.09001 * 109.47545 * 325.00078 * 11 10 5 30 30 H 1.09006 * 109.47511 * 204.99743 * 11 10 5 31 31 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0781 -0.7924 1.2105 5 6 2.2664 -2.1762 0.6196 6 6 2.2180 -2.0388 -0.7621 7 6 2.3515 -3.1749 -1.5559 8 6 2.5358 -4.4120 -0.9732 9 6 2.5940 -4.5345 0.4025 10 6 2.4520 -3.4115 1.1989 11 6 2.5065 -3.5398 2.6994 12 6 1.1064 -3.6548 3.2450 13 1 0.2616 -3.6372 2.5723 14 6 0.9039 -3.7825 4.6028 15 7 1.9326 -3.8034 5.4220 16 14 -0.8316 -3.9243 5.2790 17 1 -0.7779 -4.0508 6.7576 18 1 -1.6061 -2.7111 4.9133 19 1 -1.4905 -5.1243 4.7036 20 8 2.0431 -0.7377 -1.1222 21 1 -0.3633 0.4632 0.9173 22 1 -0.3633 0.5629 -0.8598 23 1 -0.3633 -1.0260 -0.0576 24 1 1.3529 -0.8117 2.0240 25 1 3.0290 -0.3800 1.5477 26 1 2.3112 -3.0876 -2.6316 27 1 2.6390 -5.2888 -1.5954 28 1 2.7459 -5.5036 0.8544 29 1 2.9899 -2.6590 3.1221 30 1 3.0752 -4.4302 2.9676 31 1 2.8338 -3.7294 5.0708 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:26 Heat of formation + Delta-G solvation = -28.211954 kcal Electronic energy + Delta-G solvation = -14496.451120 eV Core-core repulsion = 12128.330376 eV Total energy + Delta-G solvation = -2368.120744 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74329 -37.23091 -33.88079 -32.52669 -30.77074 -29.99537 -27.06056 -25.91923 -23.16562 -21.82888 -21.16337 -20.11254 -16.92753 -16.34325 -16.17223 -15.39931 -15.08872 -13.80531 -13.50108 -13.40468 -13.27055 -12.84070 -12.37564 -12.01466 -11.88511 -11.66634 -11.53692 -11.07372 -10.98828 -10.70504 -10.54148 -10.42542 -10.15746 -9.73351 -8.96462 -8.41102 -7.88045 -7.58222 -6.41599 -4.12866 1.88712 2.02426 3.40375 3.42015 3.60878 3.63889 4.30306 4.52361 4.85321 5.05413 5.15827 5.33150 5.43576 5.46422 5.53336 5.67381 5.89583 5.95568 5.99695 6.09343 6.24614 6.32670 6.44012 6.65289 6.86771 6.91967 7.01101 7.12179 7.22724 7.59556 7.75042 8.08618 8.39337 8.79849 9.57852 10.97241 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028384 B = 0.009765 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.237956 B = 2866.784349 C = 3382.232996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.076 3.924 3 H 0.108 0.892 4 C -0.101 4.101 5 C -0.168 4.168 6 C 0.096 3.904 7 C -0.166 4.166 8 C -0.091 4.091 9 C -0.153 4.153 10 C 0.014 3.986 11 C 0.036 3.964 12 C -0.589 4.589 13 H 0.050 0.950 14 C 0.018 3.982 15 N -0.910 5.910 16 Si 1.068 2.932 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.287 1.287 20 O -0.309 6.309 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.081 0.919 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 4.619 -10.180 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.020 3.980 3 H 0.126 0.874 4 C -0.138 4.138 5 C -0.168 4.168 6 C 0.052 3.948 7 C -0.185 4.185 8 C -0.109 4.109 9 C -0.172 4.172 10 C 0.014 3.986 11 C -0.001 4.001 12 C -0.627 4.627 13 H 0.068 0.932 14 C -0.186 4.186 15 N -0.546 5.546 16 Si 0.896 3.104 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.214 1.214 20 O -0.224 6.224 21 H 0.093 0.907 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.099 0.901 26 H 0.134 0.866 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.512 4.580 -8.981 10.194 hybrid contribution 0.817 0.131 -1.324 1.561 sum -0.694 4.710 -10.305 11.352 Atomic orbital electron populations 1.22209 0.94529 1.03367 1.02437 1.23370 0.94551 0.95922 0.84113 0.87431 1.21755 1.02395 0.91493 0.98191 1.20467 1.08219 0.95323 0.92825 1.19546 0.97592 0.84575 0.93105 1.19975 1.10127 0.89715 0.98695 1.20733 0.99296 0.95901 0.94947 1.20973 1.04765 0.98509 0.92913 1.19697 0.90587 0.90157 0.98143 1.18461 0.98476 0.96959 0.86177 1.21831 0.91189 1.55339 0.94345 0.93202 1.25853 1.05524 0.93793 0.93466 1.70789 0.99752 1.46269 1.37813 0.83547 0.73946 0.76643 0.76239 1.20691 1.21395 1.21354 1.86775 1.80245 1.17180 1.38207 0.90697 0.92039 0.91669 0.88209 0.90096 0.86610 0.86090 0.86062 0.96213 0.96246 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.52 37.16 0.35 -2.01 16 2 C 0.08 1.17 4.30 -25.83 -0.11 1.06 16 3 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.10 -1.83 6.27 -26.52 -0.17 -2.00 16 5 C -0.17 -3.47 6.07 -104.10 -0.63 -4.11 16 6 C 0.10 1.85 6.92 -38.95 -0.27 1.58 16 7 C -0.17 -2.91 10.06 -39.30 -0.40 -3.30 16 8 C -0.09 -1.55 10.02 -39.68 -0.40 -1.95 16 9 C -0.15 -3.06 9.70 -39.52 -0.38 -3.45 16 10 C 0.01 0.32 5.06 -104.76 -0.53 -0.21 16 11 C 0.04 0.92 4.28 -29.03 -0.12 0.80 16 12 C -0.59 -16.46 9.09 -34.44 -0.31 -16.77 16 13 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 14 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 15 N -0.91 -27.27 13.65 55.43 0.76 -26.51 16 16 Si 1.07 24.96 29.90 -169.99 -5.08 19.88 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 O -0.31 -5.51 10.82 -20.16 -0.22 -5.73 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 24 H 0.10 1.92 7.92 -51.93 -0.41 1.51 16 25 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 27 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 28 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 29 H 0.02 0.52 7.80 -51.93 -0.41 0.12 16 30 H 0.02 0.51 7.92 -51.93 -0.41 0.10 16 31 H 0.27 8.02 7.22 -40.82 -0.29 7.72 16 LS Contribution 265.88 15.07 4.01 4.01 Total: -1.00 -30.62 265.88 -7.71 -38.33 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.10 Total: -0.01 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: -3.07 Total: -29.96 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.76 Total: -26.51 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.22 Total: -5.73 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.62 -7.71 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.116 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds