Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 110.66238 * 2 1 4 4 C 1.54709 * 110.74564 * 123.21071 * 2 1 3 5 5 C 1.51644 * 101.91951 * 93.19805 * 4 2 1 6 6 C 1.38929 * 107.03156 * 15.47708 * 5 4 2 7 7 C 1.39242 * 118.87527 * 180.68679 * 6 5 4 8 8 C 1.37979 * 120.23721 * 359.65258 * 7 6 5 9 9 C 1.38239 * 120.35477 * 359.77939 * 8 7 6 10 10 C 1.37693 * 132.17925 * 195.77391 * 5 4 2 11 11 C 1.50696 * 120.01239 * 359.45582 * 10 5 4 12 12 C 1.50706 * 109.47259 * 84.99738 * 11 10 5 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 300.00068 * 16 14 12 19 19 H 1.48504 * 109.47102 * 60.00417 * 16 14 12 20 20 O 1.36131 * 111.23194 * 0.93875 * 6 5 4 21 21 H 1.08996 * 109.47025 * 296.78974 * 1 2 3 22 22 H 1.08999 * 109.46916 * 56.78859 * 1 2 3 23 23 H 1.08998 * 109.47003 * 176.78551 * 1 2 3 24 24 H 1.08999 * 110.94016 * 335.04337 * 4 2 1 25 25 H 1.09001 * 110.93451 * 211.35403 * 4 2 1 26 26 H 1.07998 * 119.88323 * 179.67754 * 7 6 5 27 27 H 1.08004 * 119.82060 * 180.02562 * 8 7 6 28 28 H 1.08000 * 120.12071 * 180.46870 * 9 8 7 29 29 H 1.09001 * 109.47545 * 325.00078 * 11 10 5 30 30 H 1.09006 * 109.47511 * 204.99743 * 11 10 5 31 31 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0781 -0.7924 1.2105 5 6 2.2664 -2.1762 0.6196 6 6 2.2180 -2.0388 -0.7621 7 6 2.3515 -3.1749 -1.5559 8 6 2.5358 -4.4120 -0.9732 9 6 2.5940 -4.5345 0.4025 10 6 2.4520 -3.4115 1.1989 11 6 2.5065 -3.5398 2.6994 12 6 1.1064 -3.6548 3.2450 13 1 0.2616 -3.6372 2.5723 14 6 0.9039 -3.7825 4.6028 15 7 1.9326 -3.8034 5.4220 16 14 -0.8316 -3.9243 5.2790 17 1 -0.7779 -4.0508 6.7576 18 1 -1.6061 -2.7111 4.9133 19 1 -1.4905 -5.1243 4.7036 20 8 2.0431 -0.7377 -1.1222 21 1 -0.3633 0.4632 0.9173 22 1 -0.3633 0.5629 -0.8598 23 1 -0.3633 -1.0260 -0.0576 24 1 1.3529 -0.8117 2.0240 25 1 3.0290 -0.3800 1.5477 26 1 2.3112 -3.0876 -2.6316 27 1 2.6390 -5.2888 -1.5954 28 1 2.7459 -5.5036 0.8544 29 1 2.9899 -2.6590 3.1221 30 1 3.0752 -4.4302 2.9676 31 1 2.8338 -3.7294 5.0708 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -45.500494 kcal Electronic energy + Delta-G solvation = -14497.200807 eV Core-core repulsion = 12128.330376 eV Total energy + Delta-G solvation = -2368.870431 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.15380 -38.72223 -35.83730 -34.08063 -32.34438 -31.46932 -28.74868 -27.46346 -25.19117 -23.28459 -22.54008 -21.68746 -19.00290 -17.71740 -17.66213 -16.81059 -16.51032 -15.69353 -15.40893 -14.86701 -14.68952 -14.32577 -13.98454 -13.54125 -13.35202 -13.20022 -13.02305 -12.87357 -12.64639 -12.33949 -12.01768 -11.96060 -11.78685 -11.43633 -10.97533 -10.59697 -9.52533 -9.06547 -8.68436 -6.42692 0.40975 0.48932 1.50391 1.57966 1.78071 2.29780 2.52773 2.83770 3.11919 3.53568 3.69580 3.93116 4.00177 4.18263 4.25263 4.31297 4.49249 4.59636 4.66341 4.78860 4.85913 4.91934 4.97652 5.07258 5.18316 5.23809 5.41436 5.51702 5.69355 5.86215 5.90991 6.12303 6.28947 6.52453 7.36852 8.68333 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.028384 B = 0.009765 C = 0.008277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.237956 B = 2866.784349 C = 3382.232996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.145 0.855 4 C -0.106 4.106 5 C -0.191 4.191 6 C 0.091 3.909 7 C -0.160 4.160 8 C -0.076 4.076 9 C -0.169 4.169 10 C -0.022 4.022 11 C 0.045 3.955 12 C -0.596 4.596 13 H 0.042 0.958 14 C -0.032 4.032 15 N -0.934 5.934 16 Si 1.115 2.885 17 H -0.281 1.281 18 H -0.268 1.268 19 H -0.271 1.271 20 O -0.310 6.310 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.164 0.836 28 H 0.121 0.879 29 H -0.001 1.001 30 H -0.001 1.001 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.825 5.165 -12.291 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 H 0.162 0.838 4 C -0.143 4.143 5 C -0.192 4.192 6 C 0.046 3.954 7 C -0.178 4.178 8 C -0.094 4.094 9 C -0.187 4.187 10 C -0.022 4.022 11 C 0.009 3.991 12 C -0.634 4.634 13 H 0.061 0.939 14 C -0.230 4.230 15 N -0.571 5.571 16 Si 0.935 3.065 17 H -0.206 1.206 18 H -0.193 1.193 19 H -0.196 1.196 20 O -0.225 6.225 21 H 0.105 0.895 22 H 0.105 0.895 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.169 0.831 27 H 0.182 0.818 28 H 0.139 0.861 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.650 5.133 -11.116 12.527 hybrid contribution 1.229 -0.027 -0.744 1.437 sum -1.421 5.106 -11.859 12.990 Atomic orbital electron populations 1.22206 0.93511 1.02219 1.04250 1.23618 0.95385 0.96720 0.81753 0.83777 1.21818 1.02255 0.91273 0.98952 1.20715 1.08550 0.95591 0.94337 1.19791 0.97413 0.85693 0.92498 1.20474 1.07917 0.89028 1.00402 1.21132 0.96984 0.97494 0.93793 1.21120 1.05405 0.97751 0.94468 1.19564 0.94139 0.92225 0.96269 1.18215 0.96932 0.94855 0.89136 1.22082 0.92056 1.54677 0.94546 0.93947 1.27367 1.08632 0.92761 0.94207 1.70918 0.99670 1.48336 1.38143 0.82972 0.69789 0.78027 0.75678 1.20614 1.19307 1.19598 1.86768 1.80311 1.16547 1.38890 0.89501 0.89531 0.94315 0.90324 0.89717 0.83140 0.81803 0.86098 0.98321 0.98295 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.29 9.52 71.98 0.69 -3.60 16 2 C 0.08 2.30 4.30 31.18 0.13 2.44 16 3 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 4 C -0.11 -3.86 6.27 30.73 0.19 -3.67 16 5 C -0.19 -7.98 6.07 -19.53 -0.12 -8.10 16 6 C 0.09 3.33 6.92 22.68 0.16 3.49 16 7 C -0.16 -5.08 10.06 22.45 0.23 -4.85 16 8 C -0.08 -2.41 10.02 22.21 0.22 -2.19 16 9 C -0.17 -6.73 9.70 22.31 0.22 -6.51 16 10 C -0.02 -1.00 5.06 -19.96 -0.10 -1.11 16 11 C 0.05 2.45 4.28 29.10 0.12 2.58 16 12 C -0.60 -34.38 9.09 25.60 0.23 -34.15 16 13 H 0.04 2.46 7.74 -2.91 -0.02 2.43 16 14 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 15 N -0.93 -57.67 13.65 21.45 0.29 -57.38 16 16 Si 1.11 50.24 29.90 68.60 2.05 52.29 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 O -0.31 -10.30 10.82 -95.04 -1.03 -11.33 16 21 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.04 1.20 8.09 -2.39 -0.02 1.18 16 24 H 0.08 3.15 7.92 -2.39 -0.02 3.13 16 25 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 27 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 28 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 29 H 0.00 -0.08 7.80 -2.39 -0.02 -0.10 16 30 H 0.00 -0.07 7.92 -2.38 -0.02 -0.09 16 31 H 0.26 16.02 7.22 -92.71 -0.67 15.35 16 Total: -1.00 -67.69 265.88 4.95 -62.74 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.20 Total: 10.73 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 2.43 Total: -57.05 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.29 Total: -57.38 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.03 Total: -11.33 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.05 Total: 52.29 kcal Total: -67.69 4.95 -62.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.235 kcal (2) G-P(sol) polarization free energy of solvation -67.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds