Wall clock time and date at job start Mon Mar 30 2020 02:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47241 * 2 1 4 4 C 1.50702 * 109.47096 * 240.00030 * 2 1 3 5 5 H 1.07994 * 120.00285 * 240.00168 * 4 2 1 6 6 C 1.37878 * 120.00024 * 60.00269 * 4 2 1 7 7 N 1.31521 * 119.99844 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00379 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46996 * 59.99928 * 8 6 4 10 10 H 1.48498 * 109.47480 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46982 * 300.00274 * 8 6 4 12 12 C 1.50700 * 109.47044 * 120.00371 * 2 1 3 13 13 C 1.38281 * 120.11769 * 59.99711 * 12 2 1 14 14 C 1.37934 * 120.35194 * 179.87519 * 13 12 2 15 15 C 1.39291 * 120.24073 * 0.04673 * 14 13 12 16 16 C 1.38887 * 118.87093 * 0.26432 * 15 14 13 17 17 C 1.37742 * 120.78923 * 359.54178 * 16 15 14 18 18 C 1.51645 * 107.03095 * 179.53967 * 16 15 14 19 19 C 1.54712 * 101.94009 * 344.30372 * 18 16 15 20 20 O 1.36128 * 129.87451 * 180.48394 * 15 14 13 21 21 H 1.08998 * 109.47416 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47442 * 300.00084 * 1 2 3 23 23 H 1.09008 * 109.47262 * 59.99619 * 1 2 3 24 24 H 0.97000 * 119.99664 * 179.97438 * 7 6 4 25 25 H 1.07998 * 119.82503 * 359.90237 * 13 12 2 26 26 H 1.07996 * 119.87999 * 180.02562 * 14 13 12 27 27 H 1.08002 * 120.00802 * 180.27714 * 17 16 15 28 28 H 1.09002 * 110.94318 * 102.47799 * 18 16 15 29 29 H 1.08997 * 110.94282 * 226.13577 * 18 16 15 30 30 H 1.09001 * 110.74667 * 143.69576 * 19 18 16 31 31 H 1.08990 * 110.75053 * 267.05065 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8269 -0.4197 -5.2205 11 1 3.8075 -1.1189 -4.0078 12 6 2.0323 -0.7105 1.2304 13 6 1.6997 -2.0343 1.4516 14 6 2.1589 -2.6901 2.5749 15 6 2.9617 -2.0233 3.4974 16 6 3.2835 -0.6919 3.2675 17 6 2.8271 -0.0402 2.1431 18 6 4.1459 -0.2365 4.4288 19 6 3.8929 -1.3510 5.4716 20 8 3.5234 -2.4744 4.6524 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 0.7088 1.1614 -3.4844 25 1 1.0774 -2.5578 0.7409 26 1 1.8947 -3.7242 2.7398 27 1 3.0888 0.9940 1.9747 28 1 5.1972 -0.2016 4.1431 29 1 3.8139 0.7312 4.8046 30 1 4.8008 -1.5656 6.0354 31 1 3.0776 -1.0760 6.1406 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261291228.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:37 Heat of formation + Delta-G solvation = -19.047962 kcal Electronic energy + Delta-G solvation = -14240.906435 eV Core-core repulsion = 11873.183072 eV Total energy + Delta-G solvation = -2367.723363 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.59426 -37.39860 -33.94640 -32.26309 -31.08177 -28.86759 -27.74645 -25.11665 -23.07182 -22.24629 -21.42189 -19.39877 -16.93662 -16.50345 -15.95708 -15.51684 -14.98504 -14.12523 -13.57871 -13.03591 -12.86732 -12.62363 -12.49973 -12.02542 -11.82888 -11.52085 -11.35904 -10.99305 -10.88686 -10.50233 -10.34254 -10.05804 -9.99439 -9.45629 -8.95540 -8.37153 -8.26496 -7.31005 -6.00862 -4.07731 1.92726 2.06785 3.31935 3.36302 3.39665 3.62753 4.33299 4.47411 4.71283 4.88625 5.11369 5.29833 5.34766 5.53488 5.68722 5.85390 5.93286 6.12838 6.19287 6.19535 6.58667 6.85253 6.92238 6.93148 7.13435 7.17599 7.29550 7.34680 7.71189 7.78384 7.97309 8.10071 8.39989 8.94857 9.56935 11.04615 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.048198 B = 0.007092 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.799777 B = 3947.259760 C = 4051.727986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.075 3.925 3 H 0.034 0.966 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.053 4.053 13 C -0.080 4.080 14 C -0.139 4.139 15 C 0.068 3.932 16 C -0.179 4.179 17 C -0.083 4.083 18 C -0.107 4.107 19 C 0.053 3.947 20 O -0.314 6.314 21 H 0.028 0.972 22 H 0.008 0.992 23 H 0.085 0.915 24 H 0.261 0.739 25 H 0.131 0.869 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -2.184 11.644 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.052 0.948 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.053 4.053 13 C -0.098 4.098 14 C -0.157 4.157 15 C 0.024 3.976 16 C -0.180 4.180 17 C -0.101 4.101 18 C -0.144 4.144 19 C -0.022 4.022 20 O -0.229 6.229 21 H 0.048 0.952 22 H 0.027 0.973 23 H 0.104 0.896 24 H 0.071 0.929 25 H 0.149 0.851 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.250 -2.287 11.583 12.246 hybrid contribution 0.433 -0.269 -0.833 0.977 sum 3.683 -2.556 10.750 11.648 Atomic orbital electron populations 1.21794 0.97641 0.99315 1.00251 1.17833 0.92825 0.95350 0.88350 0.94783 1.21103 1.31221 1.12422 0.89891 0.92468 1.24959 0.95039 0.95003 0.98933 1.69878 1.36642 1.22884 1.23525 0.86641 0.79247 0.79799 0.82244 1.20218 1.21284 1.20283 1.20590 0.94745 0.93933 0.96029 1.20841 0.99004 0.94689 0.95230 1.20222 1.00103 1.00188 0.95221 1.19392 0.96590 0.93152 0.88490 1.20631 1.03241 0.95411 0.98678 1.20308 0.97802 0.99653 0.92346 1.21715 1.00064 0.99365 0.93291 1.23720 1.00515 0.84733 0.93227 1.86759 1.75746 1.32136 1.28292 0.95243 0.97263 0.89634 0.92894 0.85093 0.86506 0.86462 0.89777 0.89689 0.88388 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.78 37.16 0.33 -2.84 16 2 C 0.07 1.86 2.48 -92.92 -0.23 1.63 16 3 H 0.03 0.90 7.89 -51.93 -0.41 0.50 16 4 C -0.51 -13.77 8.25 -34.44 -0.28 -14.06 16 5 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 C -0.05 -1.15 4.74 -104.56 -0.50 -1.65 16 13 C -0.08 -1.62 8.70 -39.68 -0.35 -1.96 16 14 C -0.14 -2.56 10.06 -39.30 -0.40 -2.96 16 15 C 0.07 1.24 7.04 -38.95 -0.27 0.96 16 16 C -0.18 -3.17 6.27 -104.10 -0.65 -3.82 16 17 C -0.08 -1.64 9.66 -39.72 -0.38 -2.02 16 18 C -0.11 -1.41 7.11 -26.52 -0.19 -1.60 16 19 C 0.05 0.65 8.02 38.06 0.31 0.95 16 20 O -0.31 -5.20 11.10 -20.15 -0.22 -5.43 16 21 H 0.03 0.66 7.39 -51.93 -0.38 0.28 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.09 2.24 6.07 -51.92 -0.32 1.92 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.13 2.62 7.57 -52.49 -0.40 2.22 16 26 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.12 2.17 7.95 -52.49 -0.42 1.75 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -29.08 261.26 -7.39 -36.47 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.99 Total: -0.91 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -2.71 Total: -25.76 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.63 Total: -24.46 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.22 Total: -5.43 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.08 -7.39 -36.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261291228.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.420 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds