Wall clock time and date at job start Mon Mar 30 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86805 * 119.99660 * 2 1 4 4 H 1.48500 * 109.46971 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47204 * 119.99573 * 3 2 1 6 6 H 1.48504 * 109.46850 * 239.99564 * 3 2 1 7 7 C 1.40007 * 120.00611 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99326 * 2.54975 * 7 2 1 9 9 C 1.41448 * 120.00341 * 182.54825 * 7 2 1 10 10 C 1.40406 * 119.79798 * 186.79980 * 9 7 2 11 11 C 1.39025 * 118.88029 * 179.73250 * 10 9 7 12 12 N 1.39243 * 120.77999 * 180.23909 * 11 10 9 13 13 C 1.46506 * 119.99898 * 180.29688 * 12 11 10 14 14 C 1.52991 * 109.47435 * 180.02562 * 13 12 11 15 15 C 1.53001 * 117.50026 * 243.75090 * 14 13 12 16 16 C 1.53003 * 117.50051 * 175.09240 * 14 13 12 17 17 C 1.39709 * 118.43348 * 0.53648 * 11 10 9 18 18 C 1.38453 * 119.47361 * 359.72361 * 17 11 10 19 19 N 1.31537 * 121.10386 * 0.02562 * 18 17 11 20 20 H 0.97010 * 119.99796 * 174.85056 * 1 2 3 21 21 H 1.08003 * 120.55607 * 359.97438 * 10 9 7 22 22 H 0.96994 * 120.00779 * 0.30115 * 12 11 10 23 23 H 1.08995 * 109.47044 * 300.00881 * 13 12 11 24 24 H 1.09001 * 109.46812 * 59.99980 * 13 12 11 25 25 H 1.09004 * 115.55297 * 29.41487 * 14 13 12 26 26 H 1.09009 * 117.49869 * 359.97438 * 15 14 13 27 27 H 1.09002 * 117.50289 * 145.01486 * 15 14 13 28 28 H 1.08999 * 117.49518 * 214.98213 * 16 14 13 29 29 H 1.08995 * 117.49581 * 359.97438 * 16 14 13 30 30 H 1.07998 * 120.26358 * 179.75096 * 17 11 10 31 31 H 1.07998 * 119.45209 * 180.02562 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6966 1.2126 6 1 3.0952 1.6964 -1.2125 7 6 2.0076 -1.2124 0.0005 8 1 1.4683 -2.1473 -0.0407 9 6 3.4210 -1.2129 0.0550 10 6 4.1244 -2.4196 -0.0886 11 6 5.5135 -2.3973 -0.0376 12 7 6.2507 -3.5699 -0.1803 13 6 7.7138 -3.5275 -0.1173 14 6 8.2734 -4.9393 -0.3025 15 6 9.0432 -5.5534 0.8684 16 6 9.7937 -5.0917 -0.3832 17 6 6.1521 -1.1715 0.1666 18 6 5.3923 -0.0224 0.3054 19 7 4.0789 -0.0653 0.2489 20 1 -0.4850 -0.8368 -0.0754 21 1 3.5952 -3.3489 -0.2401 22 1 5.7958 -4.4147 -0.3216 23 1 8.0930 -2.8801 -0.9079 24 1 8.0245 -3.1374 0.8520 25 1 7.6674 -5.6090 -0.9128 26 1 9.1514 -4.9514 1.7707 27 1 8.9439 -6.6271 1.0283 28 1 10.1877 -5.8618 -1.0464 29 1 10.3951 -4.1861 -0.3048 30 1 7.2297 -1.1207 0.2152 31 1 5.8863 0.9250 0.4628 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306224692.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:04 Heat of formation + Delta-G solvation = 36.330557 kcal Electronic energy + Delta-G solvation = -13822.516480 eV Core-core repulsion = 11489.487261 eV Total energy + Delta-G solvation = -2333.029219 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.81483 -37.72727 -35.01345 -33.45776 -30.28560 -29.73552 -26.24822 -25.01557 -22.57678 -22.09329 -20.88321 -20.24944 -18.28444 -16.35586 -16.14649 -15.20927 -14.51118 -14.27706 -14.10920 -13.73954 -13.49973 -12.63803 -12.56703 -12.21174 -12.00662 -11.73733 -11.38229 -10.84274 -10.64061 -10.45594 -10.29526 -10.06640 -9.62455 -9.48787 -9.18960 -7.88946 -7.57680 -7.13390 -6.96297 -4.71294 2.67238 2.89376 3.52808 3.71123 3.79727 3.96288 4.13290 4.56098 4.57619 4.73525 4.76716 4.86581 5.18828 5.42903 5.56662 5.65541 5.69891 5.79418 5.83701 5.92205 6.07213 6.21609 6.42009 6.67413 6.88000 7.21565 7.34253 7.39302 7.54310 8.08499 8.16292 8.28966 8.51480 8.76805 9.64406 10.10358 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.065713 B = 0.006153 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.995507 B = 4549.236137 C = 4890.804524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.044 3.956 3 Si 1.159 2.841 4 H -0.336 1.336 5 H -0.279 1.279 6 H -0.295 1.295 7 C -0.478 4.478 8 H 0.078 0.922 9 C 0.277 3.723 10 C -0.337 4.337 11 C 0.268 3.732 12 N -0.750 5.750 13 C 0.164 3.836 14 C -0.165 4.165 15 C -0.178 4.178 16 C -0.174 4.174 17 C -0.367 4.367 18 C 0.177 3.823 19 N -0.595 5.595 20 H 0.281 0.719 21 H 0.099 0.901 22 H 0.392 0.608 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.407 -7.271 -0.247 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.176 4.176 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.207 1.207 6 H -0.223 1.223 7 C -0.509 4.509 8 H 0.096 0.904 9 C 0.155 3.845 10 C -0.363 4.363 11 C 0.162 3.838 12 N -0.382 5.382 13 C 0.039 3.961 14 C -0.183 4.183 15 C -0.215 4.215 16 C -0.211 4.211 17 C -0.395 4.395 18 C 0.015 3.985 19 N -0.316 5.316 20 H 0.092 0.908 21 H 0.118 0.882 22 H 0.226 0.774 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.764 -4.981 -0.076 14.638 hybrid contribution 0.493 -3.207 -0.243 3.254 sum 14.257 -8.188 -0.319 16.444 Atomic orbital electron populations 1.70668 1.08233 1.32602 1.31709 1.27839 0.95248 1.06342 0.88200 0.81746 0.70339 0.69154 0.79344 1.27043 1.20714 1.22294 1.20731 0.90447 0.96053 1.43697 0.90404 1.18366 0.93641 0.86444 0.86077 1.20983 0.91092 0.99068 1.25202 1.17725 0.90627 0.85641 0.89843 1.44381 1.04074 1.07452 1.82340 1.20688 0.81351 0.93541 1.00542 1.22480 0.94612 0.98333 1.02893 1.23076 1.04369 1.01129 0.92955 1.22942 0.93708 1.03391 1.01101 1.20703 0.98417 0.92690 1.27650 1.21881 0.89763 0.96175 0.90718 1.66483 1.08998 1.28241 1.27882 0.90814 0.88248 0.77406 0.92446 0.92675 0.87521 0.88565 0.88882 0.88715 0.88538 0.88109 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.84 13.65 55.55 0.76 -22.08 16 2 C 0.04 1.24 5.52 -17.35 -0.10 1.15 16 3 Si 1.16 29.48 25.56 -169.99 -4.34 25.13 16 4 H -0.34 -8.42 7.11 56.52 0.40 -8.02 16 5 H -0.28 -7.06 6.67 56.52 0.38 -6.68 16 6 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 7 C -0.48 -13.57 9.58 -37.70 -0.36 -13.93 16 8 H 0.08 2.21 8.05 -52.48 -0.42 1.79 16 9 C 0.28 7.52 6.39 -85.02 -0.54 6.98 16 10 C -0.34 -8.20 9.72 -38.47 -0.37 -8.57 16 11 C 0.27 5.74 6.69 -83.65 -0.56 5.18 16 12 N -0.75 -12.61 5.72 -58.50 -0.33 -12.94 16 13 C 0.16 2.23 5.22 -4.04 -0.02 2.20 16 14 C -0.16 -1.77 5.84 -90.62 -0.53 -2.30 16 15 C -0.18 -1.68 10.18 -26.69 -0.27 -1.95 16 16 C -0.17 -1.54 10.25 -26.69 -0.27 -1.81 16 17 C -0.37 -7.73 9.40 -38.95 -0.37 -8.10 16 18 C 0.18 4.01 11.17 -17.60 -0.20 3.82 16 19 N -0.59 -15.63 4.55 -11.21 -0.05 -15.68 16 20 H 0.28 7.57 8.72 -40.82 -0.36 7.22 16 21 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 22 H 0.39 6.00 8.43 -40.82 -0.34 5.66 16 23 H 0.06 0.80 7.99 -51.93 -0.41 0.38 16 24 H 0.06 0.77 7.72 -51.93 -0.40 0.37 16 25 H 0.11 1.11 8.04 -51.93 -0.42 0.70 16 26 H 0.10 0.92 8.03 -51.92 -0.42 0.50 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.84 6.87 -52.49 -0.36 1.48 16 31 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 264.73 15.07 3.99 3.99 Total: -1.00 -30.06 264.73 -7.64 -37.70 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.07 Total: 1.21 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.59 Total: -17.33 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.37 Total: -50.70 kcal Atomic # 14 Polarization: 29.48 SS G_CDS: -4.34 Total: 25.13 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.06 -7.64 -37.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306224692.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.035 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds