Wall clock time and date at job start Mon Mar 30 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86805 * 119.99660 * 2 1 4 4 H 1.48500 * 109.46971 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47204 * 119.99573 * 3 2 1 6 6 H 1.48504 * 109.46850 * 239.99564 * 3 2 1 7 7 C 1.40007 * 120.00611 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99326 * 2.54975 * 7 2 1 9 9 C 1.41448 * 120.00341 * 182.54825 * 7 2 1 10 10 C 1.40406 * 119.79798 * 186.79980 * 9 7 2 11 11 C 1.39025 * 118.88029 * 179.73250 * 10 9 7 12 12 N 1.39243 * 120.77999 * 180.23909 * 11 10 9 13 13 C 1.46506 * 119.99898 * 180.29688 * 12 11 10 14 14 C 1.52991 * 109.47435 * 180.02562 * 13 12 11 15 15 C 1.53001 * 117.50026 * 243.75090 * 14 13 12 16 16 C 1.53003 * 117.50051 * 175.09240 * 14 13 12 17 17 C 1.39709 * 118.43348 * 0.53648 * 11 10 9 18 18 C 1.38453 * 119.47361 * 359.72361 * 17 11 10 19 19 N 1.31537 * 121.10386 * 0.02562 * 18 17 11 20 20 H 0.97010 * 119.99796 * 174.85056 * 1 2 3 21 21 H 1.08003 * 120.55607 * 359.97438 * 10 9 7 22 22 H 0.96994 * 120.00779 * 0.30115 * 12 11 10 23 23 H 1.08995 * 109.47044 * 300.00881 * 13 12 11 24 24 H 1.09001 * 109.46812 * 59.99980 * 13 12 11 25 25 H 1.09004 * 115.55297 * 29.41487 * 14 13 12 26 26 H 1.09009 * 117.49869 * 359.97438 * 15 14 13 27 27 H 1.09002 * 117.50289 * 145.01486 * 15 14 13 28 28 H 1.08999 * 117.49518 * 214.98213 * 16 14 13 29 29 H 1.08995 * 117.49581 * 359.97438 * 16 14 13 30 30 H 1.07998 * 120.26358 * 179.75096 * 17 11 10 31 31 H 1.07998 * 119.45209 * 180.02562 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2763 2.7465 -0.0006 5 1 3.0950 1.6966 1.2126 6 1 3.0952 1.6964 -1.2125 7 6 2.0076 -1.2124 0.0005 8 1 1.4683 -2.1473 -0.0407 9 6 3.4210 -1.2129 0.0550 10 6 4.1244 -2.4196 -0.0886 11 6 5.5135 -2.3973 -0.0376 12 7 6.2507 -3.5699 -0.1803 13 6 7.7138 -3.5275 -0.1173 14 6 8.2734 -4.9393 -0.3025 15 6 9.0432 -5.5534 0.8684 16 6 9.7937 -5.0917 -0.3832 17 6 6.1521 -1.1715 0.1666 18 6 5.3923 -0.0224 0.3054 19 7 4.0789 -0.0653 0.2489 20 1 -0.4850 -0.8368 -0.0754 21 1 3.5952 -3.3489 -0.2401 22 1 5.7958 -4.4147 -0.3216 23 1 8.0930 -2.8801 -0.9079 24 1 8.0245 -3.1374 0.8520 25 1 7.6674 -5.6090 -0.9128 26 1 9.1514 -4.9514 1.7707 27 1 8.9439 -6.6271 1.0283 28 1 10.1877 -5.8618 -1.0464 29 1 10.3951 -4.1861 -0.3048 30 1 7.2297 -1.1207 0.2152 31 1 5.8863 0.9250 0.4628 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306224692.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:04 Heat of formation + Delta-G solvation = 17.866655 kcal Electronic energy + Delta-G solvation = -13823.317135 eV Core-core repulsion = 11489.487261 eV Total energy + Delta-G solvation = -2333.829874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.54909 -38.76691 -36.50645 -35.40998 -32.19780 -31.32795 -27.84344 -26.67978 -23.83762 -23.24944 -22.43285 -21.54119 -20.24477 -17.82391 -17.63380 -16.60018 -16.24905 -15.83878 -15.51054 -15.06864 -14.83680 -14.37632 -14.28980 -14.09927 -13.96888 -12.66622 -12.44766 -12.37464 -12.25004 -11.95679 -11.65150 -11.56486 -11.30862 -11.24620 -10.83412 -9.83057 -9.57586 -9.17734 -8.55269 -6.80360 0.77398 1.05174 1.66372 1.80375 2.12771 2.46829 2.56521 2.74233 2.93570 3.67939 3.72202 3.98260 4.05303 4.09101 4.27954 4.51069 4.59615 4.63708 4.78328 4.79029 4.87199 5.01284 5.09930 5.22046 5.25429 5.40925 5.48745 5.50243 5.62322 6.06711 6.27791 6.62109 6.73797 6.89834 7.72555 8.01081 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.065713 B = 0.006153 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.995507 B = 4549.236137 C = 4890.804524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.016 3.984 3 Si 1.195 2.805 4 H -0.334 1.334 5 H -0.277 1.277 6 H -0.296 1.296 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.263 3.737 10 C -0.358 4.358 11 C 0.276 3.724 12 N -0.738 5.738 13 C 0.161 3.839 14 C -0.179 4.179 15 C -0.178 4.178 16 C -0.160 4.160 17 C -0.348 4.348 18 C 0.161 3.839 19 N -0.620 5.620 20 H 0.277 0.723 21 H 0.098 0.902 22 H 0.400 0.600 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.032 -7.703 -0.207 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.200 4.200 3 Si 1.028 2.972 4 H -0.269 1.269 5 H -0.204 1.204 6 H -0.225 1.225 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.140 3.860 10 C -0.384 4.384 11 C 0.165 3.835 12 N -0.369 5.369 13 C 0.037 3.963 14 C -0.197 4.197 15 C -0.214 4.214 16 C -0.197 4.197 17 C -0.376 4.376 18 C 0.001 3.999 19 N -0.342 5.342 20 H 0.088 0.912 21 H 0.116 0.884 22 H 0.235 0.765 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.127 0.873 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.156 0.844 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 17.439 -5.457 -0.036 18.273 hybrid contribution -0.293 -3.247 -0.254 3.270 sum 17.147 -8.704 -0.289 19.231 Atomic orbital electron populations 1.70689 1.08525 1.32369 1.34518 1.28606 0.95518 1.08077 0.87755 0.81260 0.69551 0.67265 0.79127 1.26854 1.20439 1.22456 1.20705 0.91636 0.95461 1.47236 0.92472 1.18483 0.93433 0.87919 0.86171 1.21053 0.92756 0.98314 1.26297 1.17825 0.89903 0.87548 0.88189 1.44550 1.05579 1.06366 1.80374 1.20884 0.78907 0.95749 1.00765 1.22369 0.96023 0.96825 1.04502 1.23157 1.03740 1.01718 0.92831 1.23055 0.92074 1.03969 1.00606 1.21142 1.00240 0.91774 1.24398 1.22582 0.88821 0.98531 0.89956 1.66419 1.10871 1.27983 1.28961 0.91224 0.88361 0.76540 0.92102 0.92356 0.87310 0.88691 0.87882 0.87283 0.87850 0.84398 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.04 13.65 21.83 0.30 -48.74 16 2 C 0.02 0.91 5.52 85.28 0.47 1.38 16 3 Si 1.19 60.48 25.56 68.60 1.75 62.23 16 4 H -0.33 -16.51 7.11 99.48 0.71 -15.81 16 5 H -0.28 -13.69 6.67 99.48 0.66 -13.03 16 6 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 7 C -0.52 -30.64 9.58 23.49 0.23 -30.41 16 8 H 0.06 3.46 8.05 -2.91 -0.02 3.44 16 9 C 0.26 14.44 6.39 40.18 0.26 14.70 16 10 C -0.36 -17.30 9.72 22.99 0.22 -17.08 16 11 C 0.28 11.09 6.69 38.51 0.26 11.35 16 12 N -0.74 -22.59 5.72 -339.01 -1.94 -24.53 16 13 C 0.16 3.74 5.22 86.38 0.45 4.20 16 14 C -0.18 -3.20 5.84 -10.80 -0.06 -3.26 16 15 C -0.18 -2.71 10.18 30.62 0.31 -2.40 16 16 C -0.16 -2.19 10.25 30.62 0.31 -1.87 16 17 C -0.35 -13.32 9.40 22.68 0.21 -13.11 16 18 C 0.16 6.80 11.17 84.79 0.95 7.75 16 19 N -0.62 -31.92 4.55 -189.37 -0.86 -32.78 16 20 H 0.28 15.77 8.72 -92.70 -0.81 14.96 16 21 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 22 H 0.40 11.25 8.43 -92.71 -0.78 10.47 16 23 H 0.06 1.42 7.99 -2.39 -0.02 1.40 16 24 H 0.06 1.36 7.72 -2.39 -0.02 1.35 16 25 H 0.11 1.93 8.04 -2.38 -0.02 1.91 16 26 H 0.09 1.48 8.03 -2.38 -0.02 1.47 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.14 4.26 6.87 -2.91 -0.02 4.24 16 31 H 0.16 5.56 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -65.44 264.73 3.12 -62.33 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.26 Total: 10.26 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.61 Total: -28.76 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -2.50 Total: -106.05 kcal Atomic # 14 Polarization: 60.48 SS G_CDS: 1.75 Total: 62.23 kcal Total: -65.44 3.12 -62.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306224692.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.192 kcal (2) G-P(sol) polarization free energy of solvation -65.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds