Wall clock time and date at job start Mon Mar 30 2020 02:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.26726 * 2 1 4 4 C 1.54345 * 110.30350 * 122.07506 * 2 1 3 5 5 C 1.54347 * 102.39156 * 145.36734 * 4 2 1 6 6 O 1.42904 * 110.30283 * 214.73509 * 5 4 2 7 7 C 1.50702 * 110.30226 * 92.58162 * 5 4 2 8 8 H 1.07997 * 120.00031 * 2.79903 * 7 5 4 9 9 C 1.37875 * 119.99764 * 182.79805 * 7 5 4 10 10 N 1.31518 * 120.00161 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99950 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47204 * 90.00010 * 11 9 7 13 13 H 1.48500 * 109.47131 * 209.99932 * 11 9 7 14 14 H 1.48500 * 109.47110 * 330.00077 * 11 9 7 15 15 C 1.51371 * 105.17106 * 333.65639 * 5 4 2 16 16 C 1.38492 * 130.39325 * 197.20208 * 15 5 4 17 17 C 1.38101 * 120.22100 * 180.02562 * 16 15 5 18 18 C 1.38254 * 119.93152 * 359.97344 * 17 16 15 19 19 C 1.38105 * 119.93674 * 0.02562 * 18 17 16 20 20 C 1.38218 * 109.76045 * 17.16153 * 15 5 4 21 21 H 1.09003 * 109.46850 * 297.92111 * 1 2 3 22 22 H 1.08999 * 109.47048 * 57.92683 * 1 2 3 23 23 H 1.09001 * 109.46628 * 177.92431 * 1 2 3 24 24 H 1.08996 * 110.82094 * 27.14229 * 4 2 1 25 25 H 1.08997 * 110.99120 * 263.66997 * 4 2 1 26 26 H 0.96693 * 114.00037 * 177.20045 * 6 5 4 27 27 H 0.96999 * 119.99867 * 179.97438 * 10 9 7 28 28 H 1.08011 * 119.89162 * 359.97438 * 16 15 5 29 29 H 1.07994 * 120.04141 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.03512 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.89764 * 179.72487 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0656 -0.7687 1.2266 5 6 3.3439 -1.4311 0.6701 6 8 3.5384 -2.7140 1.2687 7 6 4.5405 -0.5496 0.9195 8 1 4.4257 0.3752 1.4653 9 6 5.7820 -0.9239 0.4508 10 7 5.9220 -2.0504 -0.2134 11 14 7.2655 0.1683 0.7605 12 1 7.9071 -0.2200 2.0421 13 1 8.2390 0.0072 -0.3493 14 1 6.8295 1.5859 0.8347 15 6 3.0995 -1.5768 -0.8166 16 6 3.7383 -2.3666 -1.7579 17 6 3.3380 -2.3344 -3.0792 18 6 2.2958 -1.5117 -3.4645 19 6 1.6574 -0.7234 -2.5273 20 6 2.0570 -0.7550 -1.2016 21 1 -0.3633 0.4812 0.9081 22 1 -0.3633 0.5457 -0.8708 23 1 -0.3632 -1.0270 -0.0372 24 1 1.3498 -1.5225 1.5542 25 1 2.3063 -0.0854 2.0410 26 1 4.3034 -3.1960 0.9261 27 1 6.7953 -2.3135 -0.5434 28 1 4.5529 -3.0093 -1.4578 29 1 3.8384 -2.9512 -3.8110 30 1 1.9816 -1.4850 -4.4974 31 1 0.8463 -0.0776 -2.8297 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306250785.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:59 Heat of formation + Delta-G solvation = -32.920751 kcal Electronic energy + Delta-G solvation = -15048.342040 eV Core-core repulsion = 12680.017107 eV Total energy + Delta-G solvation = -2368.324933 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35592 -35.76591 -34.19795 -32.17800 -30.04243 -28.77793 -27.85029 -25.28641 -22.71173 -21.58585 -19.72960 -19.17305 -17.02804 -15.82353 -15.05716 -14.61307 -14.17104 -13.84830 -13.58874 -12.90857 -12.56688 -12.09682 -11.79105 -11.69231 -11.55863 -11.33454 -11.00997 -10.65732 -10.51603 -10.38864 -10.30698 -10.19071 -9.63506 -9.45449 -8.65553 -8.24399 -7.72349 -7.45346 -6.20233 -4.34066 2.39565 2.51727 3.21322 3.27932 3.31304 4.27256 4.85205 5.03238 5.34942 5.51161 5.66599 5.81634 5.91829 6.01222 6.17204 6.20585 6.28895 6.32812 6.50619 6.60228 6.79382 6.88374 6.95589 7.03546 7.12226 7.39090 7.44431 7.57640 7.80620 8.02077 8.08448 8.12646 8.69114 9.33676 9.46068 10.78802 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.013319 C = 0.011045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.967836 B = 2101.759537 C = 2534.519086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.098 4.098 5 C 0.279 3.721 6 O -0.588 6.588 7 C -0.525 4.525 8 H 0.065 0.935 9 C 0.070 3.930 10 N -0.889 5.889 11 Si 0.903 3.097 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.058 4.058 16 C -0.075 4.075 17 C -0.146 4.146 18 C -0.147 4.147 19 C -0.126 4.126 20 C -0.109 4.109 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.379 0.621 27 H 0.268 0.732 28 H 0.148 0.852 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 1.351 -2.727 6.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.136 4.136 5 C 0.240 3.760 6 O -0.396 6.396 7 C -0.562 4.562 8 H 0.083 0.917 9 C -0.132 4.132 10 N -0.529 5.529 11 Si 0.730 3.270 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.059 4.059 16 C -0.093 4.093 17 C -0.164 4.164 18 C -0.165 4.165 19 C -0.144 4.144 20 C -0.109 4.109 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.229 0.771 27 H 0.078 0.922 28 H 0.165 0.835 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.828 1.428 -2.468 6.488 hybrid contribution 1.502 0.560 -0.519 1.685 sum -4.325 1.989 -2.986 5.620 Atomic orbital electron populations 1.21793 0.95622 1.01454 1.00679 1.20501 0.94233 0.98826 0.92687 0.90404 1.22292 0.96876 0.98161 0.96253 1.18309 0.91881 0.82293 0.83538 1.86166 1.53009 1.32548 1.67901 1.21658 0.92151 1.07222 1.35176 0.91709 1.25028 0.99237 0.95360 0.93575 1.69559 1.24222 1.22358 1.36746 0.86413 0.81825 0.80797 0.77940 1.20384 1.21036 1.19822 1.21572 0.91920 0.93196 0.99168 1.21321 0.97828 0.99015 0.91124 1.21018 0.98250 1.00592 0.96567 1.20716 0.98480 0.99358 0.97980 1.20288 1.00868 1.00944 0.92321 1.20472 0.97839 0.98996 0.93610 0.93008 0.93267 0.92831 0.92091 0.91320 0.77138 0.92196 0.83509 0.87707 0.87797 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.98 37.16 0.33 -1.85 16 2 C -0.04 -0.87 3.45 -90.73 -0.31 -1.18 16 3 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.10 -2.14 5.81 -25.32 -0.15 -2.29 16 5 C 0.28 7.05 0.92 -91.89 -0.08 6.97 16 6 O -0.59 -15.44 13.03 -35.23 -0.46 -15.90 16 7 C -0.52 -14.06 8.24 -34.44 -0.28 -14.35 16 8 H 0.06 1.72 7.57 -52.49 -0.40 1.32 16 9 C 0.07 1.84 5.25 -17.82 -0.09 1.75 16 10 N -0.89 -23.05 8.13 55.43 0.45 -22.60 16 11 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 C -0.06 -1.41 4.81 -104.21 -0.50 -1.91 16 16 C -0.07 -1.76 8.69 -39.54 -0.34 -2.10 16 17 C -0.15 -3.01 10.05 -39.63 -0.40 -3.40 16 18 C -0.15 -2.82 10.05 -39.62 -0.40 -3.21 16 19 C -0.13 -2.48 9.79 -39.53 -0.39 -2.87 16 20 C -0.11 -2.38 5.61 -104.20 -0.58 -2.97 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.06 1.28 7.88 -51.93 -0.41 0.87 16 25 H 0.07 1.44 7.74 -51.93 -0.40 1.03 16 26 H 0.38 9.92 7.23 45.56 0.33 10.25 16 27 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.15 3.59 6.01 -52.48 -0.32 3.27 16 29 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 31 H 0.10 1.71 8.00 -52.49 -0.42 1.29 16 LS Contribution 255.03 15.07 3.84 3.84 Total: -1.00 -27.50 255.03 -7.67 -35.17 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -3.28 Total: 11.23 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -3.20 Total: -27.42 kcal Atomic # 7 Polarization: -23.05 SS G_CDS: 0.45 Total: -22.60 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.46 Total: -15.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.50 -7.67 -35.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250785.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.250 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds