Wall clock time and date at job start Mon Mar 30 2020 02:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.26726 * 2 1 4 4 C 1.54345 * 110.30350 * 122.07506 * 2 1 3 5 5 C 1.54347 * 102.39156 * 145.36734 * 4 2 1 6 6 O 1.42904 * 110.30283 * 214.73509 * 5 4 2 7 7 C 1.50702 * 110.30226 * 92.58162 * 5 4 2 8 8 H 1.07997 * 120.00031 * 2.79903 * 7 5 4 9 9 C 1.37875 * 119.99764 * 182.79805 * 7 5 4 10 10 N 1.31518 * 120.00161 * 359.97438 * 9 7 5 11 11 Si 1.86801 * 119.99950 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47204 * 90.00010 * 11 9 7 13 13 H 1.48500 * 109.47131 * 209.99932 * 11 9 7 14 14 H 1.48500 * 109.47110 * 330.00077 * 11 9 7 15 15 C 1.51371 * 105.17106 * 333.65639 * 5 4 2 16 16 C 1.38492 * 130.39325 * 197.20208 * 15 5 4 17 17 C 1.38101 * 120.22100 * 180.02562 * 16 15 5 18 18 C 1.38254 * 119.93152 * 359.97344 * 17 16 15 19 19 C 1.38105 * 119.93674 * 0.02562 * 18 17 16 20 20 C 1.38218 * 109.76045 * 17.16153 * 15 5 4 21 21 H 1.09003 * 109.46850 * 297.92111 * 1 2 3 22 22 H 1.08999 * 109.47048 * 57.92683 * 1 2 3 23 23 H 1.09001 * 109.46628 * 177.92431 * 1 2 3 24 24 H 1.08996 * 110.82094 * 27.14229 * 4 2 1 25 25 H 1.08997 * 110.99120 * 263.66997 * 4 2 1 26 26 H 0.96693 * 114.00037 * 177.20045 * 6 5 4 27 27 H 0.96999 * 119.99867 * 179.97438 * 10 9 7 28 28 H 1.08011 * 119.89162 * 359.97438 * 16 15 5 29 29 H 1.07994 * 120.04141 * 179.97438 * 17 16 15 30 30 H 1.08005 * 120.03512 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.89764 * 179.72487 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0656 -0.7687 1.2266 5 6 3.3439 -1.4311 0.6701 6 8 3.5384 -2.7140 1.2687 7 6 4.5405 -0.5496 0.9195 8 1 4.4257 0.3752 1.4653 9 6 5.7820 -0.9239 0.4508 10 7 5.9220 -2.0504 -0.2134 11 14 7.2655 0.1683 0.7605 12 1 7.9071 -0.2200 2.0421 13 1 8.2390 0.0072 -0.3493 14 1 6.8295 1.5859 0.8347 15 6 3.0995 -1.5768 -0.8166 16 6 3.7383 -2.3666 -1.7579 17 6 3.3380 -2.3344 -3.0792 18 6 2.2958 -1.5117 -3.4645 19 6 1.6574 -0.7234 -2.5273 20 6 2.0570 -0.7550 -1.2016 21 1 -0.3633 0.4812 0.9081 22 1 -0.3633 0.5457 -0.8708 23 1 -0.3632 -1.0270 -0.0372 24 1 1.3498 -1.5225 1.5542 25 1 2.3063 -0.0854 2.0410 26 1 4.3034 -3.1960 0.9261 27 1 6.7953 -2.3135 -0.5434 28 1 4.5529 -3.0093 -1.4578 29 1 3.8384 -2.9512 -3.8110 30 1 1.9816 -1.4850 -4.4974 31 1 0.8463 -0.0776 -2.8297 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306250785.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:59 Heat of formation + Delta-G solvation = -48.978235 kcal Electronic energy + Delta-G solvation = -15049.038345 eV Core-core repulsion = 12680.017107 eV Total energy + Delta-G solvation = -2369.021237 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02148 -37.52875 -35.88949 -34.18931 -31.71592 -30.30812 -29.57102 -27.10839 -24.32393 -23.23568 -21.44872 -20.82036 -18.98379 -17.57925 -16.91989 -16.30828 -15.79514 -15.47977 -15.34012 -14.43904 -14.26501 -13.78966 -13.53251 -13.36403 -13.01133 -12.96422 -12.80365 -12.49251 -12.31500 -12.13321 -11.90176 -11.82719 -11.25655 -11.22018 -10.62043 -10.17284 -9.35409 -9.13967 -8.14842 -6.37754 0.76634 0.89148 1.38151 1.39580 1.48333 2.36082 3.00930 3.23285 3.79300 3.95163 4.08445 4.37229 4.43123 4.51699 4.57794 4.70560 4.76701 4.91148 4.95429 5.12269 5.18474 5.26079 5.39240 5.41649 5.49931 5.65077 5.73665 5.82782 6.01568 6.13182 6.32471 6.46270 6.69665 7.31579 7.41439 8.80518 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027047 B = 0.013319 C = 0.011045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.967836 B = 2101.759537 C = 2534.519086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 H 0.077 0.923 4 C -0.098 4.098 5 C 0.261 3.739 6 O -0.600 6.600 7 C -0.552 4.552 8 H 0.056 0.944 9 C 0.030 3.970 10 N -0.896 5.896 11 Si 0.958 3.042 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.274 1.274 15 C -0.094 4.094 16 C -0.101 4.101 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.121 4.121 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.373 0.627 27 H 0.269 0.731 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.145 0.855 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.610 2.467 -4.205 8.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 H 0.095 0.905 4 C -0.136 4.136 5 C 0.222 3.778 6 O -0.408 6.408 7 C -0.590 4.590 8 H 0.074 0.926 9 C -0.171 4.171 10 N -0.535 5.535 11 Si 0.784 3.216 12 H -0.200 1.200 13 H -0.206 1.206 14 H -0.198 1.198 15 C -0.095 4.095 16 C -0.120 4.120 17 C -0.170 4.170 18 C -0.157 4.157 19 C -0.143 4.143 20 C -0.121 4.121 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.222 0.778 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.163 0.837 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.017 2.540 -3.946 8.442 hybrid contribution 1.865 0.168 -0.092 1.874 sum -5.153 2.709 -4.038 7.085 Atomic orbital electron populations 1.21728 0.92289 1.01850 1.02761 1.20494 0.96905 0.97831 0.90612 0.90521 1.22307 0.95643 0.98237 0.97389 1.18634 0.92824 0.81393 0.84986 1.86143 1.52693 1.33491 1.68476 1.21865 0.93603 1.07444 1.36070 0.92601 1.25692 1.01308 0.96607 0.93462 1.69690 1.24510 1.22864 1.36436 0.85554 0.79005 0.79192 0.77834 1.20038 1.20648 1.19840 1.21600 0.93940 0.95281 0.98647 1.21308 0.98226 0.99703 0.92758 1.21307 0.98866 1.01171 0.95662 1.21194 0.96989 0.97579 0.99915 1.20720 1.01362 1.00934 0.91294 1.20826 0.97294 0.98697 0.95322 0.91087 0.91073 0.93232 0.91940 0.91396 0.77830 0.92164 0.85618 0.85406 0.83696 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 8.98 71.98 0.65 -3.04 16 2 C -0.04 -1.53 3.45 -10.87 -0.04 -1.56 16 3 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 4 C -0.10 -4.30 5.81 31.51 0.18 -4.12 16 5 C 0.26 13.49 0.92 -11.62 -0.01 13.48 16 6 O -0.60 -32.82 13.03 -148.98 -1.94 -34.76 16 7 C -0.55 -30.35 8.24 25.60 0.21 -30.14 16 8 H 0.06 3.05 7.57 -2.91 -0.02 3.03 16 9 C 0.03 1.62 5.25 84.65 0.44 2.07 16 10 N -0.90 -47.63 8.13 21.45 0.17 -47.45 16 11 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 15 C -0.09 -4.63 4.81 -19.60 -0.09 -4.72 16 16 C -0.10 -4.84 8.69 22.30 0.19 -4.64 16 17 C -0.15 -6.01 10.05 22.24 0.22 -5.79 16 18 C -0.14 -4.82 10.05 22.24 0.22 -4.59 16 19 C -0.13 -4.50 9.79 22.30 0.22 -4.29 16 20 C -0.12 -5.13 5.61 -19.59 -0.11 -5.24 16 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.07 1.72 8.09 -2.39 -0.02 1.70 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 2.64 7.88 -2.39 -0.02 2.62 16 25 H 0.07 2.88 7.74 -2.39 -0.02 2.86 16 26 H 0.37 20.58 7.23 -74.06 -0.54 20.05 16 27 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 28 H 0.13 6.40 6.01 -2.90 -0.02 6.38 16 29 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.14 3.91 8.00 -2.91 -0.02 3.89 16 Total: -1.00 -59.72 255.03 2.94 -56.78 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.59 Total: 33.10 kcal Atomic # 6 Polarization: -54.68 SS G_CDS: 2.09 Total: -52.59 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.17 Total: -47.45 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.94 Total: -34.76 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -59.72 2.94 -56.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250785.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.799 kcal (2) G-P(sol) polarization free energy of solvation -59.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds