Wall clock time and date at job start Mon Mar 30 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86804 * 119.99479 * 2 1 4 4 H 1.48500 * 109.46697 * 85.18392 * 3 2 1 5 5 H 1.48506 * 109.47008 * 205.17665 * 3 2 1 6 6 H 1.48493 * 109.47415 * 325.18069 * 3 2 1 7 7 C 1.39869 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00191 * 197.37479 * 7 2 1 9 9 C 1.41203 * 119.99762 * 17.36819 * 7 2 1 10 10 C 1.41321 * 120.57072 * 204.93206 * 9 7 2 11 11 C 1.36561 * 118.40694 * 179.97438 * 10 9 7 12 12 C 1.39706 * 119.49486 * 0.02562 * 11 10 9 13 13 N 1.38371 * 119.42981 * 179.97438 * 12 11 10 14 14 C 1.46500 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.52998 * 109.47095 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49937 * 243.74448 * 15 14 13 17 17 C 1.52998 * 117.49521 * 175.08409 * 15 14 13 18 18 N 1.32736 * 121.13857 * 0.02562 * 12 11 10 19 19 C 1.31483 * 121.73112 * 359.72166 * 18 12 11 20 20 H 0.96997 * 120.00583 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.79834 * 0.02562 * 10 9 7 22 22 H 1.08010 * 120.24802 * 179.97438 * 11 10 9 23 23 H 0.96995 * 119.99741 * 180.02562 * 13 12 11 24 24 H 1.09001 * 109.46955 * 299.99935 * 14 13 12 25 25 H 1.08998 * 109.47018 * 59.99525 * 14 13 12 26 26 H 1.09000 * 115.54908 * 29.42129 * 15 14 13 27 27 H 1.09001 * 117.49405 * 0.02562 * 16 15 14 28 28 H 1.09000 * 117.49843 * 145.02129 * 16 15 14 29 29 H 1.09005 * 117.49753 * 214.97763 * 17 15 14 30 30 H 1.08995 * 117.50453 * 0.02562 * 17 15 14 31 31 H 1.08004 * 119.81806 * 180.26852 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 2.3884 2.1052 1.3952 5 1 3.5877 1.4131 -0.5956 6 1 1.4949 2.6212 -0.7994 7 6 2.0084 -1.2112 -0.0005 8 1 3.0514 -1.2326 0.2787 9 6 1.3508 -2.4061 -0.3661 10 6 1.8172 -3.6554 0.1017 11 6 1.1473 -4.7829 -0.2789 12 6 0.0314 -4.6718 -1.1120 13 7 -0.6461 -5.8152 -1.4972 14 6 -0.1918 -7.1278 -1.0313 15 6 -1.1078 -8.2148 -1.5972 16 6 -1.9257 -9.0387 -0.6007 17 6 -0.7310 -9.6713 -1.3189 18 7 -0.3897 -3.4884 -1.5411 19 6 0.2170 -2.3730 -1.1997 20 1 -0.4851 0.8400 0.0004 21 1 2.6822 -3.7169 0.7455 22 1 1.4784 -5.7532 0.0610 23 1 -1.4217 -5.7476 -2.0757 24 1 0.8297 -7.3001 -1.3703 25 1 -0.2230 -7.1575 0.0578 26 1 -1.5666 -7.9887 -2.5597 27 1 -1.8115 -8.8060 0.4580 28 1 -2.9225 -9.3550 -0.9077 29 1 -0.9425 -10.4036 -2.0982 30 1 0.1691 -9.8552 -0.7324 31 1 -0.1546 -1.4264 -1.5634 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306301561.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:54 Heat of formation + Delta-G solvation = 51.521100 kcal Electronic energy + Delta-G solvation = -13728.234645 eV Core-core repulsion = 11395.864137 eV Total energy + Delta-G solvation = -2332.370508 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.63126 -37.51667 -34.65190 -33.08947 -30.99702 -28.90614 -26.55875 -24.16008 -22.43770 -22.10923 -20.65308 -20.34376 -17.30531 -16.24753 -16.11631 -15.32261 -14.61271 -14.10823 -13.77142 -13.63356 -13.19042 -12.67512 -12.29540 -11.82032 -11.59823 -11.43847 -11.21812 -11.13254 -10.81915 -10.69734 -10.41954 -10.19741 -9.95148 -9.33981 -8.67364 -8.26818 -7.85023 -6.75410 -6.61476 -4.14518 2.84178 2.95253 3.12282 3.16922 3.29724 3.68598 3.99653 4.18277 4.73235 4.76035 4.89228 5.03406 5.36960 5.54925 5.72444 5.77364 5.83093 6.00545 6.06623 6.14356 6.23943 6.42249 6.72435 6.85557 7.22720 7.38787 7.44201 7.61074 8.12096 8.23030 8.52131 8.59930 8.90863 8.96375 9.82910 10.28480 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.087703 B = 0.005338 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.182657 B = 5244.470871 C = 5419.640607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.276 1.276 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.026 3.974 10 C -0.156 4.156 11 C -0.201 4.201 12 C 0.275 3.725 13 N -0.744 5.744 14 C 0.175 3.825 15 C -0.161 4.161 16 C -0.179 4.179 17 C -0.176 4.176 18 N -0.526 5.526 19 C 0.081 3.919 20 H 0.280 0.720 21 H 0.101 0.899 22 H 0.096 0.904 23 H 0.390 0.610 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -10.479 -1.323 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.186 1.186 6 H -0.201 1.201 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.021 3.979 10 C -0.183 4.183 11 C -0.225 4.225 12 C 0.045 3.955 13 N -0.383 5.383 14 C 0.049 3.951 15 C -0.179 4.179 16 C -0.216 4.216 17 C -0.213 4.213 18 N -0.241 5.241 19 C -0.080 4.080 20 H 0.091 0.909 21 H 0.119 0.881 22 H 0.114 0.886 23 H 0.223 0.777 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.728 -10.410 -1.741 10.695 hybrid contribution 0.774 0.738 0.479 1.172 sum -0.954 -9.673 -1.262 9.801 Atomic orbital electron populations 1.69789 1.07421 1.29156 1.36954 1.25844 0.94722 1.01141 0.92517 0.86312 0.80655 0.80905 0.78890 1.19766 1.18577 1.20094 1.19290 0.97733 0.90927 1.41076 0.90615 1.18369 0.94204 0.92718 0.92639 1.20920 1.01820 0.92629 1.02940 1.20601 0.99054 0.98051 1.04782 1.17825 0.92904 0.86072 0.98661 1.43600 1.34679 1.01895 1.58111 1.20546 0.95881 0.81330 0.97373 1.22470 1.02710 0.92226 1.00517 1.23063 0.95925 1.04293 0.98303 1.22939 0.99658 0.95172 1.03561 1.66775 1.33046 0.97722 1.26585 1.22787 0.95174 0.93571 0.96511 0.90888 0.88073 0.88621 0.77686 0.93007 0.93247 0.87477 0.88611 0.88965 0.88816 0.88627 0.82981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.23 10.96 55.54 0.61 -20.62 16 2 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.30 9.07 -37.85 -0.34 -12.64 16 8 H 0.08 1.94 7.90 -52.49 -0.41 1.53 16 9 C 0.03 0.70 5.58 -106.65 -0.60 0.11 16 10 C -0.16 -3.90 9.88 -39.02 -0.39 -4.28 16 11 C -0.20 -4.65 9.24 -39.64 -0.37 -5.01 16 12 C 0.27 6.51 7.64 -155.13 -1.19 5.32 16 13 N -0.74 -14.17 5.70 -60.36 -0.34 -14.51 16 14 C 0.17 2.65 5.15 -4.04 -0.02 2.63 16 15 C -0.16 -1.93 5.84 -90.62 -0.53 -2.46 16 16 C -0.18 -1.88 10.18 -26.69 -0.27 -2.15 16 17 C -0.18 -1.72 10.25 -26.69 -0.27 -2.00 16 18 N -0.53 -13.78 10.37 -11.79 -0.12 -13.90 16 19 C 0.08 2.22 9.89 -16.75 -0.17 2.06 16 20 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 21 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 22 H 0.10 1.92 6.64 -52.48 -0.35 1.58 16 23 H 0.39 7.03 8.52 -40.82 -0.35 6.68 16 24 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 25 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 26 H 0.11 1.25 8.04 -51.93 -0.42 0.84 16 27 H 0.10 1.02 8.03 -51.93 -0.42 0.60 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.15 4.27 6.17 -52.48 -0.32 3.95 16 LS Contribution 267.45 15.07 4.03 4.03 Total: -1.00 -28.74 267.45 -8.99 -37.72 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -3.90 Total: 10.10 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -4.23 Total: -16.65 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.14 Total: -49.03 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.74 -8.99 -37.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306301561.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.243 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds