Wall clock time and date at job start Mon Mar 30 2020 02:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86804 * 119.99479 * 2 1 4 4 H 1.48500 * 109.46697 * 85.18392 * 3 2 1 5 5 H 1.48506 * 109.47008 * 205.17665 * 3 2 1 6 6 H 1.48493 * 109.47415 * 325.18069 * 3 2 1 7 7 C 1.39869 * 120.00558 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00191 * 197.37479 * 7 2 1 9 9 C 1.41203 * 119.99762 * 17.36819 * 7 2 1 10 10 C 1.41321 * 120.57072 * 204.93206 * 9 7 2 11 11 C 1.36561 * 118.40694 * 179.97438 * 10 9 7 12 12 C 1.39706 * 119.49486 * 0.02562 * 11 10 9 13 13 N 1.38371 * 119.42981 * 179.97438 * 12 11 10 14 14 C 1.46500 * 120.00180 * 0.02562 * 13 12 11 15 15 C 1.52998 * 109.47095 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49937 * 243.74448 * 15 14 13 17 17 C 1.52998 * 117.49521 * 175.08409 * 15 14 13 18 18 N 1.32736 * 121.13857 * 0.02562 * 12 11 10 19 19 C 1.31483 * 121.73112 * 359.72166 * 18 12 11 20 20 H 0.96997 * 120.00583 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.79834 * 0.02562 * 10 9 7 22 22 H 1.08010 * 120.24802 * 179.97438 * 11 10 9 23 23 H 0.96995 * 119.99741 * 180.02562 * 13 12 11 24 24 H 1.09001 * 109.46955 * 299.99935 * 14 13 12 25 25 H 1.08998 * 109.47018 * 59.99525 * 14 13 12 26 26 H 1.09000 * 115.54908 * 29.42129 * 15 14 13 27 27 H 1.09001 * 117.49405 * 0.02562 * 16 15 14 28 28 H 1.09000 * 117.49843 * 145.02129 * 16 15 14 29 29 H 1.09005 * 117.49753 * 214.97763 * 17 15 14 30 30 H 1.08995 * 117.50453 * 0.02562 * 17 15 14 31 31 H 1.08004 * 119.81806 * 180.26852 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 2.3884 2.1052 1.3952 5 1 3.5877 1.4131 -0.5956 6 1 1.4949 2.6212 -0.7994 7 6 2.0084 -1.2112 -0.0005 8 1 3.0514 -1.2326 0.2787 9 6 1.3508 -2.4061 -0.3661 10 6 1.8172 -3.6554 0.1017 11 6 1.1473 -4.7829 -0.2789 12 6 0.0314 -4.6718 -1.1120 13 7 -0.6461 -5.8152 -1.4972 14 6 -0.1918 -7.1278 -1.0313 15 6 -1.1078 -8.2148 -1.5972 16 6 -1.9257 -9.0387 -0.6007 17 6 -0.7310 -9.6713 -1.3189 18 7 -0.3897 -3.4884 -1.5411 19 6 0.2170 -2.3730 -1.1997 20 1 -0.4851 0.8400 0.0004 21 1 2.6822 -3.7169 0.7455 22 1 1.4784 -5.7532 0.0610 23 1 -1.4217 -5.7476 -2.0757 24 1 0.8297 -7.3001 -1.3703 25 1 -0.2230 -7.1575 0.0578 26 1 -1.5666 -7.9887 -2.5597 27 1 -1.8115 -8.8060 0.4580 28 1 -2.9225 -9.3550 -0.9077 29 1 -0.9425 -10.4036 -2.0982 30 1 0.1691 -9.8552 -0.7324 31 1 -0.1546 -1.4264 -1.5634 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306301561.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:54 Heat of formation + Delta-G solvation = 35.046442 kcal Electronic energy + Delta-G solvation = -13728.949040 eV Core-core repulsion = 11395.864137 eV Total energy + Delta-G solvation = -2333.084903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43599 -38.62077 -36.32803 -34.82126 -32.94641 -30.74242 -28.09787 -25.91295 -23.93583 -23.21712 -22.50259 -21.48712 -19.24256 -17.92270 -17.60704 -16.84625 -16.15115 -15.54501 -15.37154 -15.03179 -14.71055 -14.30816 -14.03198 -13.59674 -13.32707 -12.87746 -12.69413 -12.51022 -12.35405 -12.22253 -11.82778 -11.30245 -11.27616 -11.00735 -10.41979 -10.17932 -9.81993 -8.64324 -8.44620 -6.13004 0.94573 1.03840 1.42640 1.54526 1.59496 2.25942 2.56535 2.83972 2.99270 3.77790 3.80169 4.02764 4.13303 4.25753 4.36970 4.55919 4.64429 4.80975 4.82464 4.84337 4.97860 5.04939 5.26418 5.28983 5.29554 5.44489 5.52289 5.73937 6.13871 6.36661 6.70093 6.75986 6.94165 7.13888 7.89139 8.41551 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.087703 B = 0.005338 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.182657 B = 5244.470871 C = 5419.640607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.269 1.269 7 C -0.492 4.492 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.200 4.200 12 C 0.276 3.724 13 N -0.736 5.736 14 C 0.172 3.828 15 C -0.177 4.177 16 C -0.178 4.178 17 C -0.158 4.158 18 N -0.548 5.548 19 C 0.054 3.946 20 H 0.287 0.713 21 H 0.119 0.881 22 H 0.131 0.869 23 H 0.394 0.606 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 -11.865 -1.113 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.193 1.193 7 C -0.524 4.524 8 H 0.097 0.903 9 C -0.011 4.011 10 C -0.186 4.186 11 C -0.224 4.224 12 C 0.044 3.956 13 N -0.375 5.375 14 C 0.047 3.953 15 C -0.195 4.195 16 C -0.215 4.215 17 C -0.195 4.195 18 N -0.264 5.264 19 C -0.106 4.106 20 H 0.098 0.902 21 H 0.137 0.863 22 H 0.148 0.852 23 H 0.228 0.772 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.127 0.873 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.249 -11.827 -1.534 11.991 hybrid contribution 0.566 0.956 0.415 1.187 sum -0.683 -10.870 -1.119 10.949 Atomic orbital electron populations 1.69858 1.09021 1.30464 1.37452 1.26728 0.95442 1.04495 0.91401 0.85160 0.79099 0.75999 0.79214 1.18855 1.18195 1.19309 1.19557 0.98072 0.91957 1.42777 0.90347 1.18664 0.94846 0.94096 0.93531 1.21249 1.02236 0.92466 1.02626 1.20929 0.98413 0.99103 1.04002 1.18270 0.93046 0.86587 0.97737 1.43802 1.34196 1.01992 1.57498 1.20741 0.96863 0.80205 0.97452 1.22344 1.03560 0.92561 1.01047 1.23147 0.96908 1.03586 0.97843 1.23057 0.99501 0.93531 1.03453 1.66755 1.33700 0.98372 1.27557 1.22551 0.96383 0.93576 0.98042 0.90242 0.86306 0.85156 0.77195 0.92691 0.93255 0.87258 0.88914 0.87741 0.87062 0.87960 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.45 10.96 21.82 0.24 -45.21 16 2 C 0.03 1.65 5.15 85.23 0.44 2.09 16 3 Si 0.98 38.88 29.59 68.60 2.03 40.91 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.49 -26.96 9.07 23.39 0.21 -26.75 16 8 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 9 C -0.01 -0.35 5.58 -21.18 -0.12 -0.47 16 10 C -0.16 -7.89 9.88 22.64 0.22 -7.67 16 11 C -0.20 -9.04 9.24 22.23 0.21 -8.83 16 12 C 0.28 12.94 7.64 133.32 1.02 13.95 16 13 N -0.74 -27.10 5.70 -344.87 -1.97 -29.07 16 14 C 0.17 4.83 5.15 86.38 0.44 5.27 16 15 C -0.18 -3.79 5.84 -10.80 -0.06 -3.85 16 16 C -0.18 -3.23 10.18 30.62 0.31 -2.92 16 17 C -0.16 -2.57 10.25 30.62 0.31 -2.25 16 18 N -0.55 -29.22 10.37 -191.20 -1.98 -31.21 16 19 C 0.05 3.07 9.89 85.36 0.84 3.91 16 20 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 21 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 22 H 0.13 4.88 6.64 -2.91 -0.02 4.87 16 23 H 0.39 13.83 8.52 -92.71 -0.79 13.04 16 24 H 0.06 1.53 7.90 -2.39 -0.02 1.51 16 25 H 0.05 1.41 7.64 -2.39 -0.02 1.39 16 26 H 0.11 2.31 8.04 -2.39 -0.02 2.29 16 27 H 0.09 1.75 8.03 -2.39 -0.02 1.73 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.11 1.45 8.14 -2.38 -0.02 1.44 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.13 7.95 6.17 -2.91 -0.02 7.93 16 Total: -1.00 -62.55 267.45 2.50 -60.06 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.34 Total: 32.02 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.83 Total: -27.51 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.71 Total: -105.48 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -62.55 2.50 -60.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306301561.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.106 kcal (2) G-P(sol) polarization free energy of solvation -62.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds