Wall clock time and date at job start Mon Mar 30 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48502 * 109.46867 * 240.00038 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47380 * 120.00114 * 3 2 1 7 7 C 1.39879 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00309 * 191.87683 * 7 2 1 9 9 C 1.41024 * 120.00150 * 11.87084 * 7 2 1 10 10 C 1.40670 * 120.26688 * 27.46726 * 9 7 2 11 11 C 1.38006 * 119.77264 * 180.24772 * 10 9 7 12 12 N 1.39844 * 119.84000 * 179.77196 * 11 10 9 13 13 C 1.47963 * 111.00309 * 217.62929 * 12 11 10 14 14 C 1.53932 * 86.18311 * 137.58296 * 13 12 11 15 15 C 1.47963 * 111.00383 * 316.98761 * 12 11 10 16 16 C 1.39605 * 120.31711 * 359.49760 * 11 10 9 17 17 C 1.38055 * 120.55389 * 0.25370 * 16 11 10 18 18 C 1.38737 * 120.21474 * 0.02562 * 17 16 11 19 19 N 1.38867 * 120.16010 * 180.02562 * 18 17 16 20 20 H 0.96996 * 119.99696 * 4.99227 * 1 2 3 21 21 H 1.08003 * 120.11652 * 0.02562 * 10 9 7 22 22 H 1.09001 * 113.75538 * 23.26095 * 13 12 11 23 23 H 1.09001 * 113.76090 * 251.90709 * 13 12 11 24 24 H 1.09000 * 113.73425 * 90.64092 * 14 13 12 25 25 H 1.09000 * 113.73620 * 221.92218 * 14 13 12 26 26 H 1.09003 * 113.75522 * 108.09987 * 15 12 11 27 27 H 1.08994 * 113.85534 * 336.74966 * 15 12 11 28 28 H 1.07997 * 119.72386 * 180.23177 * 16 11 10 29 29 H 1.07995 * 119.89420 * 179.97438 * 17 16 11 30 30 H 0.97001 * 120.00292 * 6.05054 * 19 18 17 31 31 H 0.96997 * 120.00188 * 186.06107 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6965 1.2124 7 6 2.0084 -1.2114 -0.0005 8 1 3.0711 -1.2215 0.1919 9 6 1.3260 -2.4195 -0.2523 10 6 0.1591 -2.4243 -1.0379 11 6 -0.5035 -3.6117 -1.2736 12 7 -1.6663 -3.6174 -2.0504 13 6 -2.6550 -4.5809 -1.5180 14 6 -3.7086 -3.4917 -1.7883 15 6 -2.5485 -2.4845 -1.6929 16 6 -0.0153 -4.8081 -0.7449 17 6 1.1315 -4.8195 0.0235 18 6 1.8123 -3.6381 0.2794 19 7 2.9661 -3.6510 1.0521 20 1 -0.4849 0.8369 -0.0731 21 1 -0.2190 -1.5014 -1.4522 22 1 -2.5205 -4.8091 -0.4607 23 1 -2.7761 -5.4717 -2.1344 24 1 -4.1572 -3.5516 -2.7799 25 1 -4.4464 -3.3878 -0.9926 26 1 -2.5843 -1.7003 -2.4491 27 1 -2.3840 -2.0981 -0.6871 28 1 -0.5394 -5.7323 -0.9385 29 1 1.4994 -5.7510 0.4275 30 1 3.3470 -4.4950 1.3410 31 1 3.3910 -2.8159 1.3032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306396210.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:41 Heat of formation + Delta-G solvation = 56.258768 kcal Electronic energy + Delta-G solvation = -14561.756822 eV Core-core repulsion = 12229.591755 eV Total energy + Delta-G solvation = -2332.165067 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64159 -37.14578 -33.53711 -32.91390 -29.53246 -28.97634 -26.22382 -25.06535 -24.31653 -20.93256 -20.27961 -18.92029 -17.26440 -16.01237 -15.51834 -15.42198 -15.02030 -14.66336 -13.54512 -13.02724 -12.52024 -12.21663 -12.03014 -11.72574 -11.53912 -11.37584 -11.04596 -10.98672 -10.72636 -10.52197 -10.25653 -9.88049 -9.40147 -9.31818 -9.09996 -8.15404 -7.30887 -6.64966 -5.93848 -4.13896 2.85537 3.11332 3.13741 3.15298 3.25645 4.01933 4.58456 4.90170 5.03935 5.29484 5.42914 5.77341 5.90496 6.02960 6.13531 6.14453 6.24224 6.43948 6.51854 6.55162 6.71430 7.06395 7.23805 7.27094 7.55099 7.66800 7.76301 8.01415 8.24055 8.34172 8.63427 8.85246 8.90060 9.13888 9.20920 10.35814 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.011381 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.329978 B = 2459.658547 C = 3410.835604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.463 4.463 8 H 0.070 0.930 9 C 0.074 3.926 10 C -0.149 4.149 11 C 0.031 3.969 12 N -0.439 5.439 13 C 0.009 3.991 14 C -0.154 4.154 15 C 0.018 3.982 16 C -0.206 4.206 17 C -0.171 4.171 18 C 0.109 3.891 19 N -0.886 5.886 20 H 0.276 0.724 21 H 0.127 0.873 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.376 0.624 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 -2.830 -0.141 3.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.495 4.495 8 H 0.088 0.912 9 C 0.068 3.932 10 C -0.171 4.171 11 C -0.065 4.065 12 N -0.156 5.156 13 C -0.119 4.119 14 C -0.192 4.192 15 C -0.110 4.110 16 C -0.228 4.228 17 C -0.195 4.195 18 C 0.008 3.992 19 N -0.428 5.428 20 H 0.087 0.913 21 H 0.144 0.856 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.201 0.799 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.834 -2.704 -0.800 3.998 hybrid contribution 0.607 0.787 0.983 1.398 sum -2.227 -1.918 0.183 2.944 Atomic orbital electron populations 1.69798 1.07156 1.28834 1.37799 1.25712 0.94760 1.00644 0.92847 0.86447 0.80033 0.81018 0.79580 1.19214 1.20539 1.19371 1.19098 0.95438 0.90735 1.44192 0.91160 1.17112 0.93450 0.90610 0.92004 1.20890 0.99002 0.95473 1.01757 1.19108 0.94988 0.94622 0.97809 1.65920 1.01120 1.04205 1.44325 1.23822 0.92083 0.96422 0.99526 1.23372 0.96885 0.97200 1.01701 1.23828 0.90899 0.94482 1.01773 1.19926 1.00374 0.95162 1.07336 1.19833 0.98585 0.95015 1.06050 1.18001 0.90242 0.94281 0.96702 1.41887 1.30006 1.08747 1.62110 0.91285 0.85557 0.91031 0.90508 0.90006 0.91628 0.90402 0.89823 0.89309 0.89432 0.79900 0.78098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.86 10.81 55.54 0.60 -20.26 16 2 C 0.08 1.90 5.24 -17.33 -0.09 1.81 16 3 Si 0.90 18.98 29.58 -169.99 -5.03 13.95 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.16 8.43 -37.91 -0.32 -12.48 16 8 H 0.07 1.75 6.81 -52.49 -0.36 1.40 16 9 C 0.07 1.96 5.57 -106.66 -0.59 1.37 16 10 C -0.15 -3.92 7.49 -38.75 -0.29 -4.21 16 11 C 0.03 0.76 5.40 -83.78 -0.45 0.30 16 12 N -0.44 -9.29 6.36 -174.88 -1.11 -10.40 16 13 C 0.01 0.16 6.74 -2.77 -0.02 0.15 16 14 C -0.15 -2.37 8.28 -25.80 -0.21 -2.58 16 15 C 0.02 0.34 6.82 -2.77 -0.02 0.32 16 16 C -0.21 -4.77 8.78 -39.14 -0.34 -5.12 16 17 C -0.17 -3.93 9.87 -39.46 -0.39 -4.32 16 18 C 0.11 2.65 6.79 -83.22 -0.56 2.08 16 19 N -0.89 -17.96 8.97 32.75 0.29 -17.67 16 20 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 21 H 0.13 3.46 5.49 -52.48 -0.29 3.17 16 22 H 0.07 1.29 7.33 -51.93 -0.38 0.91 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.08 1.79 7.53 -51.93 -0.39 1.40 16 28 H 0.09 1.87 7.16 -52.49 -0.38 1.49 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.38 6.40 8.84 -40.82 -0.36 6.04 16 31 H 0.39 7.77 7.14 -40.82 -0.29 7.48 16 LS Contribution 255.66 15.07 3.85 3.85 Total: -1.00 -28.11 255.66 -8.38 -36.49 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -3.69 Total: 16.72 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -3.30 Total: -22.68 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.22 Total: -48.34 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.11 -8.38 -36.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306396210.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.748 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds