Wall clock time and date at job start Mon Mar 30 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48502 * 109.46867 * 240.00038 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47380 * 120.00114 * 3 2 1 7 7 C 1.39879 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00309 * 191.87683 * 7 2 1 9 9 C 1.41024 * 120.00150 * 11.87084 * 7 2 1 10 10 C 1.40670 * 120.26688 * 27.46726 * 9 7 2 11 11 C 1.38006 * 119.77264 * 180.24772 * 10 9 7 12 12 N 1.39844 * 119.84000 * 179.77196 * 11 10 9 13 13 C 1.47963 * 111.00309 * 217.62929 * 12 11 10 14 14 C 1.53932 * 86.18311 * 137.58296 * 13 12 11 15 15 C 1.47963 * 111.00383 * 316.98761 * 12 11 10 16 16 C 1.39605 * 120.31711 * 359.49760 * 11 10 9 17 17 C 1.38055 * 120.55389 * 0.25370 * 16 11 10 18 18 C 1.38737 * 120.21474 * 0.02562 * 17 16 11 19 19 N 1.38867 * 120.16010 * 180.02562 * 18 17 16 20 20 H 0.96996 * 119.99696 * 4.99227 * 1 2 3 21 21 H 1.08003 * 120.11652 * 0.02562 * 10 9 7 22 22 H 1.09001 * 113.75538 * 23.26095 * 13 12 11 23 23 H 1.09001 * 113.76090 * 251.90709 * 13 12 11 24 24 H 1.09000 * 113.73425 * 90.64092 * 14 13 12 25 25 H 1.09000 * 113.73620 * 221.92218 * 14 13 12 26 26 H 1.09003 * 113.75522 * 108.09987 * 15 12 11 27 27 H 1.08994 * 113.85534 * 336.74966 * 15 12 11 28 28 H 1.07997 * 119.72386 * 180.23177 * 16 11 10 29 29 H 1.07995 * 119.89420 * 179.97438 * 17 16 11 30 30 H 0.97001 * 120.00292 * 6.05054 * 19 18 17 31 31 H 0.96997 * 120.00188 * 186.06107 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6965 1.2124 7 6 2.0084 -1.2114 -0.0005 8 1 3.0711 -1.2215 0.1919 9 6 1.3260 -2.4195 -0.2523 10 6 0.1591 -2.4243 -1.0379 11 6 -0.5035 -3.6117 -1.2736 12 7 -1.6663 -3.6174 -2.0504 13 6 -2.6550 -4.5809 -1.5180 14 6 -3.7086 -3.4917 -1.7883 15 6 -2.5485 -2.4845 -1.6929 16 6 -0.0153 -4.8081 -0.7449 17 6 1.1315 -4.8195 0.0235 18 6 1.8123 -3.6381 0.2794 19 7 2.9661 -3.6510 1.0521 20 1 -0.4849 0.8369 -0.0731 21 1 -0.2190 -1.5014 -1.4522 22 1 -2.5205 -4.8091 -0.4607 23 1 -2.7761 -5.4717 -2.1344 24 1 -4.1572 -3.5516 -2.7799 25 1 -4.4464 -3.3878 -0.9926 26 1 -2.5843 -1.7003 -2.4491 27 1 -2.3840 -2.0981 -0.6871 28 1 -0.5394 -5.7323 -0.9385 29 1 1.4994 -5.7510 0.4275 30 1 3.3470 -4.4950 1.3410 31 1 3.3910 -2.8159 1.3032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306396210.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:41 Heat of formation + Delta-G solvation = 37.294577 kcal Electronic energy + Delta-G solvation = -14562.579171 eV Core-core repulsion = 12229.591755 eV Total energy + Delta-G solvation = -2332.987416 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.24016 -38.89983 -35.41575 -34.62287 -31.42066 -30.59781 -27.93663 -26.68087 -26.06319 -22.78528 -21.91611 -20.49189 -19.07913 -17.80550 -17.27429 -17.02943 -16.53478 -16.40428 -15.20304 -14.79491 -14.30348 -13.89731 -13.70965 -13.45147 -13.15370 -13.03580 -12.75458 -12.54945 -12.37869 -12.15723 -11.79839 -11.59495 -11.17649 -11.00519 -10.96441 -9.80572 -9.23101 -8.52305 -7.72445 -6.07883 1.04603 1.28372 1.39828 1.49304 1.54047 2.25964 2.80231 3.28811 3.65160 3.66020 3.85017 4.10086 4.40774 4.55515 4.66524 4.73615 4.74660 4.84542 4.94924 4.96036 5.18798 5.34624 5.36317 5.47219 5.72065 5.85204 5.98072 6.16516 6.38693 6.45634 6.83825 6.96206 7.03353 7.32407 7.55820 8.49758 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.026450 B = 0.011381 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.329978 B = 2459.658547 C = 3410.835604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.492 4.492 8 H 0.074 0.926 9 C 0.037 3.963 10 C -0.173 4.173 11 C 0.024 3.976 12 N -0.456 5.456 13 C 0.009 3.991 14 C -0.127 4.127 15 C 0.012 3.988 16 C -0.208 4.208 17 C -0.177 4.177 18 C 0.098 3.902 19 N -0.874 5.874 20 H 0.280 0.720 21 H 0.105 0.895 22 H 0.064 0.936 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.393 0.607 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -3.628 -0.129 4.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.523 4.523 8 H 0.092 0.908 9 C 0.032 3.968 10 C -0.196 4.196 11 C -0.073 4.073 12 N -0.173 5.173 13 C -0.119 4.119 14 C -0.164 4.164 15 C -0.116 4.116 16 C -0.230 4.230 17 C -0.201 4.201 18 C -0.005 4.005 19 N -0.417 5.417 20 H 0.090 0.910 21 H 0.123 0.877 22 H 0.082 0.918 23 H 0.118 0.882 24 H 0.124 0.876 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.221 0.779 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.183 -3.532 -0.773 4.817 hybrid contribution 0.682 0.936 0.961 1.505 sum -2.500 -2.596 0.188 3.609 Atomic orbital electron populations 1.69891 1.08481 1.29782 1.38314 1.26536 0.95542 1.03784 0.92161 0.85368 0.78664 0.76683 0.79610 1.19199 1.19883 1.18476 1.19356 0.95767 0.91611 1.45610 0.90793 1.17504 0.94289 0.91987 0.93031 1.20837 0.99998 0.95681 1.03078 1.19324 0.95944 0.94261 0.97759 1.65901 1.01104 1.06125 1.44191 1.23929 0.91292 0.97214 0.99423 1.23294 0.95722 0.93598 1.03832 1.23758 0.92882 0.94979 0.99989 1.20266 1.00460 0.95658 1.06607 1.20193 0.98368 0.95785 1.05733 1.18178 0.91325 0.94019 0.96954 1.41768 1.28890 1.09849 1.61204 0.90967 0.87697 0.91767 0.88199 0.87644 0.89377 0.90621 0.92797 0.86967 0.86473 0.77868 0.77932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.63 10.81 21.82 0.24 -44.40 16 2 C 0.03 1.63 5.24 85.23 0.45 2.08 16 3 Si 0.97 39.41 29.58 68.60 2.03 41.44 16 4 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.49 -26.45 8.43 23.35 0.20 -26.25 16 8 H 0.07 3.75 6.81 -2.91 -0.02 3.73 16 9 C 0.04 2.03 5.57 -21.18 -0.12 1.91 16 10 C -0.17 -9.45 7.49 22.81 0.17 -9.28 16 11 C 0.02 1.18 5.40 38.14 0.21 1.38 16 12 N -0.46 -19.07 6.36 -707.21 -4.50 -23.57 16 13 C 0.01 0.29 6.74 86.40 0.58 0.87 16 14 C -0.13 -3.58 8.28 31.24 0.26 -3.32 16 15 C 0.01 0.45 6.82 86.40 0.59 1.04 16 16 C -0.21 -9.40 8.78 22.56 0.20 -9.21 16 17 C -0.18 -7.89 9.87 22.35 0.22 -7.67 16 18 C 0.10 4.73 6.79 38.97 0.26 5.00 16 19 N -0.87 -34.70 8.97 -50.31 -0.45 -35.15 16 20 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 21 H 0.11 6.06 5.49 -2.91 -0.02 6.05 16 22 H 0.06 2.20 7.33 -2.39 -0.02 2.18 16 23 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.05 2.39 7.53 -2.39 -0.02 2.37 16 28 H 0.11 4.45 7.16 -2.91 -0.02 4.43 16 29 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.39 12.69 8.84 -92.71 -0.82 11.87 16 31 H 0.39 15.43 7.14 -92.71 -0.66 14.77 16 Total: -1.00 -61.43 255.66 0.01 -61.42 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.32 Total: 43.71 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 3.02 Total: -43.45 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.71 Total: -103.11 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -61.43 0.01 -61.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306396210.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.714 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds