Wall clock time and date at job start Mon Mar 30 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47064 * 300.00392 * 3 2 1 6 6 H 1.48510 * 109.46848 * 59.99987 * 3 2 1 7 7 C 1.40019 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.41452 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.40398 * 119.79748 * 180.02562 * 9 7 2 11 11 C 1.39024 * 118.88092 * 179.97438 * 10 9 7 12 12 N 1.39243 * 120.78485 * 179.97438 * 11 10 9 13 13 C 1.46501 * 120.00133 * 179.97438 * 12 11 10 14 14 C 1.53787 * 113.61128 * 155.00426 * 13 12 11 15 15 C 1.53784 * 87.07923 * 139.98386 * 14 13 12 16 16 C 1.53779 * 87.08045 * 334.56667 * 15 14 13 17 17 C 1.39710 * 118.43009 * 0.24797 * 11 10 9 18 18 C 1.38447 * 119.47513 * 359.49828 * 17 11 10 19 19 N 1.31536 * 121.10587 * 0.51825 * 18 17 11 20 20 H 0.96997 * 119.99671 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.55808 * 359.97438 * 10 9 7 22 22 H 0.97005 * 119.99738 * 0.02562 * 12 11 10 23 23 H 1.09000 * 112.90742 * 23.75469 * 13 12 11 24 24 H 1.09004 * 113.61202 * 254.53139 * 14 13 12 25 25 H 1.08994 * 113.61447 * 25.43570 * 14 13 12 26 26 H 1.09002 * 113.61478 * 89.11632 * 15 14 13 27 27 H 1.09004 * 113.61162 * 220.01809 * 15 14 13 28 28 H 1.09006 * 113.61307 * 270.88660 * 16 15 14 29 29 H 1.08999 * 113.69146 * 139.99146 * 16 15 14 30 30 H 1.08008 * 120.26233 * 179.72524 * 17 11 10 31 31 H 1.07996 * 119.45011 * 180.25318 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3463 0.0006 5 1 1.8828 2.3964 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0001 9 6 1.3003 -2.4376 -0.0016 10 6 2.0066 -3.6510 -0.0016 11 6 1.2923 -4.8437 -0.0022 12 7 1.9524 -6.0697 -0.0027 13 6 1.1826 -7.3162 -0.0027 14 6 1.9453 -8.5112 -0.5987 15 6 1.3323 -9.3625 0.5258 16 6 1.2199 -8.0633 1.3409 17 6 -0.1035 -4.7831 -0.0080 18 6 -0.7318 -3.5495 -0.0025 19 7 -0.0366 -2.4328 -0.0021 20 1 -0.4849 0.8400 0.0004 21 1 3.0866 -3.6577 -0.0012 22 1 2.9220 -6.0985 -0.0024 23 1 0.1776 -7.1942 -0.4068 24 1 1.6049 -8.7934 -1.5951 25 1 3.0289 -8.4147 -0.5321 26 1 0.3682 -9.7999 0.2662 27 1 2.0259 -10.0870 0.9525 28 1 2.1053 -7.8444 1.9378 29 1 0.2944 -7.9827 1.9110 30 1 -0.6877 -5.6915 -0.0131 31 1 -1.8108 -3.5031 -0.0029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306511518.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:02 Heat of formation + Delta-G solvation = 51.240989 kcal Electronic energy + Delta-G solvation = -13974.466629 eV Core-core repulsion = 11642.083975 eV Total energy + Delta-G solvation = -2332.382655 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.06248 -37.69688 -34.13483 -32.94646 -29.83712 -28.40690 -25.76890 -25.49319 -24.04337 -21.62872 -20.63451 -19.30757 -17.55989 -16.11829 -15.64934 -15.18004 -14.57644 -14.18032 -13.64070 -13.05073 -12.90003 -12.45809 -12.36604 -12.14932 -11.92218 -11.24355 -11.18325 -10.96703 -10.62774 -10.54786 -10.43341 -10.13540 -9.67440 -9.61419 -9.05837 -7.52652 -7.41226 -6.61330 -6.28310 -4.43276 2.86230 3.14252 3.18726 3.23014 3.39633 4.01259 4.20836 4.71119 4.73875 4.87630 4.98106 5.13059 5.68871 5.72596 5.79418 5.89135 6.07195 6.12590 6.16324 6.23769 6.42971 6.53063 6.78024 6.99562 7.16815 7.27329 7.57562 7.68834 7.75976 8.33226 8.47175 8.55372 8.84770 9.09249 10.29613 10.45568 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.068198 B = 0.006076 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.470303 B = 4606.840884 C = 4886.056439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.436 4.436 8 H 0.081 0.919 9 C 0.282 3.718 10 C -0.346 4.346 11 C 0.253 3.747 12 N -0.743 5.743 13 C 0.140 3.860 14 C -0.151 4.151 15 C -0.141 4.141 16 C -0.159 4.159 17 C -0.372 4.372 18 C 0.149 3.851 19 N -0.507 5.507 20 H 0.270 0.730 21 H 0.093 0.907 22 H 0.389 0.611 23 H 0.103 0.897 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -10.606 0.268 10.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.099 0.901 9 C 0.157 3.843 10 C -0.372 4.372 11 C 0.148 3.852 12 N -0.374 5.374 13 C 0.033 3.967 14 C -0.190 4.190 15 C -0.179 4.179 16 C -0.199 4.199 17 C -0.400 4.400 18 C -0.018 4.018 19 N -0.221 5.221 20 H 0.081 0.919 21 H 0.111 0.889 22 H 0.223 0.777 23 H 0.121 0.879 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.398 -9.712 0.257 9.816 hybrid contribution 1.186 -0.240 0.039 1.211 sum 2.584 -9.953 0.296 10.287 Atomic orbital electron populations 1.70175 1.07114 1.27328 1.29186 1.26063 0.94852 1.00915 0.93565 0.86332 0.80847 0.81474 0.78469 1.18510 1.19901 1.19907 1.19608 0.94089 0.89427 1.43596 0.90130 1.18349 0.88177 0.91262 0.86472 1.21161 0.97962 0.91928 1.26186 1.17704 0.91693 0.84558 0.91222 1.44387 1.06902 1.02286 1.83779 1.22227 0.96618 0.82724 0.95109 1.23350 1.00378 0.96656 0.98573 1.22680 1.01005 0.96499 0.97675 1.23537 1.02318 0.95838 0.98185 1.20860 0.92369 0.98079 1.28664 1.22291 0.98473 0.88470 0.92590 1.68764 1.07188 1.26453 1.19727 0.91889 0.88856 0.77734 0.87889 0.91370 0.90176 0.90224 0.91534 0.90233 0.91552 0.89036 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.72 11.46 55.55 0.64 -19.09 16 2 C 0.07 1.87 5.50 -17.34 -0.10 1.77 16 3 Si 0.90 19.11 29.56 -169.99 -5.02 14.08 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.44 -12.13 9.14 -37.69 -0.34 -12.47 16 8 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 9 C 0.28 8.03 6.55 -85.02 -0.56 7.48 16 10 C -0.35 -8.83 9.72 -38.48 -0.37 -9.20 16 11 C 0.25 5.82 6.69 -83.65 -0.56 5.26 16 12 N -0.74 -13.43 5.52 -51.25 -0.28 -13.71 16 13 C 0.14 2.09 4.08 -67.12 -0.27 1.81 16 14 C -0.15 -1.77 7.83 -25.91 -0.20 -1.97 16 15 C -0.14 -1.48 8.08 -25.92 -0.21 -1.69 16 16 C -0.16 -2.07 7.88 -25.92 -0.20 -2.28 16 17 C -0.37 -8.62 9.34 -38.95 -0.36 -8.99 16 18 C 0.15 3.75 11.17 -17.60 -0.20 3.55 16 19 N -0.51 -14.54 7.86 -11.21 -0.09 -14.62 16 20 H 0.27 6.70 8.29 -40.82 -0.34 6.36 16 21 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 22 H 0.39 6.41 8.76 -40.82 -0.36 6.05 16 23 H 0.10 1.62 6.19 -51.93 -0.32 1.30 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.90 8.12 -51.93 -0.42 0.47 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.88 6.16 -52.48 -0.32 1.56 16 31 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 263.88 15.07 3.98 3.98 Total: -1.00 -30.20 263.88 -8.09 -38.29 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.93 Total: 7.80 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -3.38 Total: -16.73 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.27 Total: -47.43 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.20 -8.09 -38.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306511518.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.531 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds