Wall clock time and date at job start Mon Mar 30 2020 02:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86800 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47064 * 300.00392 * 3 2 1 6 6 H 1.48510 * 109.46848 * 59.99987 * 3 2 1 7 7 C 1.40019 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.41452 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.40398 * 119.79748 * 180.02562 * 9 7 2 11 11 C 1.39024 * 118.88092 * 179.97438 * 10 9 7 12 12 N 1.39243 * 120.78485 * 179.97438 * 11 10 9 13 13 C 1.46501 * 120.00133 * 179.97438 * 12 11 10 14 14 C 1.53787 * 113.61128 * 155.00426 * 13 12 11 15 15 C 1.53784 * 87.07923 * 139.98386 * 14 13 12 16 16 C 1.53779 * 87.08045 * 334.56667 * 15 14 13 17 17 C 1.39710 * 118.43009 * 0.24797 * 11 10 9 18 18 C 1.38447 * 119.47513 * 359.49828 * 17 11 10 19 19 N 1.31536 * 121.10587 * 0.51825 * 18 17 11 20 20 H 0.96997 * 119.99671 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.55808 * 359.97438 * 10 9 7 22 22 H 0.97005 * 119.99738 * 0.02562 * 12 11 10 23 23 H 1.09000 * 112.90742 * 23.75469 * 13 12 11 24 24 H 1.09004 * 113.61202 * 254.53139 * 14 13 12 25 25 H 1.08994 * 113.61447 * 25.43570 * 14 13 12 26 26 H 1.09002 * 113.61478 * 89.11632 * 15 14 13 27 27 H 1.09004 * 113.61162 * 220.01809 * 15 14 13 28 28 H 1.09006 * 113.61307 * 270.88660 * 16 15 14 29 29 H 1.08999 * 113.69146 * 139.99146 * 16 15 14 30 30 H 1.08008 * 120.26233 * 179.72524 * 17 11 10 31 31 H 1.07996 * 119.45011 * 180.25318 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7016 1.3463 0.0006 5 1 1.8828 2.3964 -1.2124 6 1 1.8828 2.3964 1.2126 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0001 9 6 1.3003 -2.4376 -0.0016 10 6 2.0066 -3.6510 -0.0016 11 6 1.2923 -4.8437 -0.0022 12 7 1.9524 -6.0697 -0.0027 13 6 1.1826 -7.3162 -0.0027 14 6 1.9453 -8.5112 -0.5987 15 6 1.3323 -9.3625 0.5258 16 6 1.2199 -8.0633 1.3409 17 6 -0.1035 -4.7831 -0.0080 18 6 -0.7318 -3.5495 -0.0025 19 7 -0.0366 -2.4328 -0.0021 20 1 -0.4849 0.8400 0.0004 21 1 3.0866 -3.6577 -0.0012 22 1 2.9220 -6.0985 -0.0024 23 1 0.1776 -7.1942 -0.4068 24 1 1.6049 -8.7934 -1.5951 25 1 3.0289 -8.4147 -0.5321 26 1 0.3682 -9.7999 0.2662 27 1 2.0259 -10.0870 0.9525 28 1 2.1053 -7.8444 1.9378 29 1 0.2944 -7.9827 1.9110 30 1 -0.6877 -5.6915 -0.0131 31 1 -1.8108 -3.5031 -0.0029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306511518.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:02 Heat of formation + Delta-G solvation = 32.578825 kcal Electronic energy + Delta-G solvation = -13975.275881 eV Core-core repulsion = 11642.083975 eV Total energy + Delta-G solvation = -2333.191907 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.47289 -39.31862 -35.87557 -34.76776 -31.81534 -30.13429 -27.69123 -26.49005 -25.33852 -23.50650 -22.41445 -20.46134 -19.39916 -17.73233 -17.15663 -16.73346 -16.02297 -15.94543 -15.40642 -14.68935 -14.48347 -14.04920 -13.76447 -13.47578 -13.32848 -12.95217 -12.84041 -12.59900 -12.09065 -12.02854 -11.79386 -11.52382 -11.23494 -11.20489 -10.82171 -9.53055 -9.40571 -8.30925 -8.22992 -6.49368 0.97566 1.40330 1.41436 1.57340 1.59400 2.25446 2.75249 2.91300 3.70244 3.78739 3.97433 4.01793 4.12934 4.29133 4.59568 4.72500 4.82514 4.84895 4.87197 5.06760 5.07554 5.11873 5.19268 5.25967 5.36756 5.53529 5.72949 5.73623 5.92380 6.31216 6.64831 6.86219 7.00562 7.13735 8.33072 8.52316 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.068198 B = 0.006076 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.470303 B = 4606.840884 C = 4886.056439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.024 3.976 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.475 4.475 8 H 0.083 0.917 9 C 0.249 3.751 10 C -0.370 4.370 11 C 0.261 3.739 12 N -0.732 5.732 13 C 0.119 3.881 14 C -0.141 4.141 15 C -0.124 4.124 16 C -0.160 4.160 17 C -0.368 4.368 18 C 0.130 3.870 19 N -0.546 5.546 20 H 0.277 0.723 21 H 0.098 0.902 22 H 0.397 0.603 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 -12.048 0.240 12.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.506 4.506 8 H 0.101 0.899 9 C 0.125 3.875 10 C -0.397 4.397 11 C 0.153 3.847 12 N -0.362 5.362 13 C 0.013 3.987 14 C -0.179 4.179 15 C -0.162 4.162 16 C -0.199 4.199 17 C -0.395 4.395 18 C -0.035 4.035 19 N -0.262 5.262 20 H 0.088 0.912 21 H 0.117 0.883 22 H 0.232 0.768 23 H 0.113 0.887 24 H 0.096 0.904 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.042 -11.230 0.230 11.417 hybrid contribution 0.947 0.000 0.052 0.948 sum 2.989 -11.230 0.282 11.624 Atomic orbital electron populations 1.70273 1.08893 1.28814 1.30011 1.27012 0.95735 1.04523 0.92403 0.85090 0.79288 0.75973 0.78853 1.17890 1.18973 1.19000 1.19961 0.94481 0.90597 1.45544 0.89867 1.18798 0.88760 0.92714 0.87252 1.21252 0.98347 0.92384 1.27698 1.17780 0.91845 0.85722 0.89386 1.44508 1.07583 1.01791 1.82311 1.22635 0.96589 0.82078 0.97398 1.23315 1.00535 0.94598 0.99479 1.22644 1.02052 0.95547 0.95929 1.23513 1.02076 0.97065 0.97255 1.21121 0.92809 0.98448 1.27162 1.22745 0.99568 0.88761 0.92455 1.68709 1.07644 1.28228 1.21625 0.91203 0.88337 0.76788 0.88679 0.90413 0.89429 0.88887 0.89680 0.90547 0.91892 0.86173 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.85 11.46 21.84 0.25 -42.60 16 2 C 0.02 1.31 5.50 85.29 0.47 1.78 16 3 Si 0.99 39.71 29.56 68.60 2.03 41.74 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.47 -27.29 9.14 23.49 0.21 -27.08 16 8 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 9 C 0.25 14.70 6.55 40.18 0.26 14.97 16 10 C -0.37 -19.30 9.72 22.98 0.22 -19.08 16 11 C 0.26 11.90 6.69 38.51 0.26 12.16 16 12 N -0.73 -25.39 5.52 -316.05 -1.74 -27.13 16 13 C 0.12 3.24 4.08 45.52 0.19 3.43 16 14 C -0.14 -2.82 7.83 31.12 0.24 -2.58 16 15 C -0.12 -2.13 8.08 31.12 0.25 -1.88 16 16 C -0.16 -3.74 7.88 31.12 0.25 -3.49 16 17 C -0.37 -16.82 9.34 22.68 0.21 -16.61 16 18 C 0.13 6.63 11.17 84.79 0.95 7.58 16 19 N -0.55 -32.31 7.86 -189.38 -1.49 -33.80 16 20 H 0.28 14.07 8.29 -92.71 -0.77 13.30 16 21 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 22 H 0.40 12.48 8.76 -92.70 -0.81 11.67 16 23 H 0.10 2.76 6.19 -2.39 -0.01 2.75 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.12 4.71 6.16 -2.91 -0.02 4.70 16 31 H 0.14 6.09 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -66.88 263.88 2.88 -64.00 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: 0.32 Total: 28.60 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 3.51 Total: -30.80 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -2.98 Total: -103.54 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -66.88 2.88 -64.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306511518.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.579 kcal (2) G-P(sol) polarization free energy of solvation -66.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds