Wall clock time and date at job start Mon Mar 30 2020 02:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.26599 * 2 1 4 4 C 1.51364 * 110.38814 * 237.86867 * 2 1 3 5 5 C 1.38507 * 130.39204 * 43.87682 * 4 2 1 6 6 C 1.38105 * 120.21398 * 180.02562 * 5 4 2 7 7 C 1.38258 * 119.93700 * 359.97438 * 6 5 4 8 8 C 1.38107 * 119.93016 * 359.97438 * 7 6 5 9 9 C 1.38215 * 109.76102 * 223.85308 * 4 2 1 10 10 C 1.51366 * 109.75668 * 359.97438 * 9 4 2 11 11 H 1.08997 * 110.30216 * 136.12045 * 10 9 4 12 12 O 1.42902 * 110.30601 * 258.26919 * 10 9 4 13 13 C 1.54343 * 110.30289 * 122.06768 * 2 1 3 14 14 H 1.09002 * 110.82506 * 26.94697 * 13 2 1 15 15 C 1.50702 * 110.82810 * 263.58982 * 13 2 1 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 13 2 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 13 2 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 13 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 H 1.08995 * 109.47243 * 297.92690 * 1 2 3 24 24 H 1.08999 * 109.47219 * 57.93024 * 1 2 3 25 25 H 1.08996 * 109.46610 * 177.92784 * 1 2 3 26 26 H 1.07996 * 119.89262 * 359.95303 * 5 4 2 27 27 H 1.07995 * 120.03257 * 179.97438 * 6 5 4 28 28 H 1.07993 * 120.03373 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.88826 * 179.97438 * 8 7 6 30 30 H 0.96703 * 114.00179 * 295.75516 * 12 10 9 31 31 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0573 -0.7546 -1.2015 5 6 1.6572 -0.7238 -2.5272 6 6 2.2954 -1.5125 -3.4642 7 6 3.3374 -2.3355 -3.0789 8 6 3.7384 -2.3667 -1.7577 9 6 3.0994 -1.5769 -0.8164 10 6 3.3440 -1.4307 0.6702 11 1 3.4925 -2.4091 1.1271 12 8 4.4789 -0.5949 0.9062 13 6 2.0656 -0.7685 1.2267 14 1 1.3483 -1.5200 1.5566 15 6 2.3990 0.1798 2.3495 16 1 2.2495 1.2417 2.2216 17 6 2.8948 -0.3083 3.5398 18 7 3.0763 -1.6015 3.6956 19 14 3.3151 0.8679 4.9288 20 1 3.8322 0.0990 6.0891 21 1 4.3517 1.8267 4.4688 22 1 2.0958 1.6132 5.3324 23 1 -0.3633 0.4813 0.9079 24 1 -0.3633 0.5456 -0.8708 25 1 -0.3632 -1.0270 -0.0372 26 1 0.8429 -0.0818 -2.8288 27 1 1.9807 -1.4865 -4.4970 28 1 3.8377 -2.9526 -3.8104 29 1 4.5521 -3.0101 -1.4573 30 1 5.3117 -0.9604 0.5775 31 1 2.8576 -2.2123 2.9745 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307324756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:23 Heat of formation + Delta-G solvation = -32.767922 kcal Electronic energy + Delta-G solvation = -14786.442023 eV Core-core repulsion = 12418.123717 eV Total energy + Delta-G solvation = -2368.318305 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79461 -36.35096 -34.29495 -32.43980 -30.81528 -29.12956 -27.58575 -24.53034 -23.46196 -21.55322 -20.23088 -19.37072 -17.04123 -16.40928 -15.59101 -14.98989 -14.39939 -13.66314 -13.51792 -13.36734 -12.96959 -12.64717 -12.33176 -11.94334 -11.68179 -11.20408 -11.00156 -10.82686 -10.74625 -10.35607 -10.09775 -10.00520 -9.38335 -8.94601 -8.49501 -8.46361 -8.26536 -8.08466 -6.24207 -3.92078 1.73911 1.78484 3.50179 3.54522 3.71039 4.15073 4.62476 4.99671 5.24760 5.32118 5.36123 5.50857 5.55488 5.79611 5.83943 5.87709 6.00092 6.12460 6.21908 6.37959 6.48027 6.62283 6.74964 6.79353 6.80623 6.97796 7.04453 7.27480 7.40654 7.44522 8.18822 8.51764 8.73405 8.98827 9.76815 11.14629 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043636 B = 0.009617 C = 0.008483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.514909 B = 2910.826358 C = 3299.745069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 H 0.082 0.918 4 C -0.067 4.067 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.136 4.136 8 C -0.107 4.107 9 C -0.129 4.129 10 C 0.143 3.857 11 H 0.045 0.955 12 O -0.516 6.516 13 C 0.051 3.949 14 H 0.040 0.960 15 C -0.564 4.564 16 H 0.049 0.951 17 C 0.027 3.973 18 N -0.914 5.914 19 Si 1.068 2.932 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.290 1.290 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.344 0.656 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -0.463 -10.623 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.066 4.066 3 H 0.100 0.900 4 C -0.067 4.067 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.154 4.154 8 C -0.125 4.125 9 C -0.130 4.130 10 C 0.084 3.916 11 H 0.063 0.937 12 O -0.317 6.317 13 C 0.032 3.968 14 H 0.057 0.943 15 C -0.602 4.602 16 H 0.067 0.933 17 C -0.176 4.176 18 N -0.550 5.550 19 Si 0.897 3.103 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.217 1.217 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.187 0.813 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.838 0.003 -8.773 8.813 hybrid contribution -0.032 -0.552 -2.124 2.195 sum -0.870 -0.550 -10.897 10.945 Atomic orbital electron populations 1.21693 0.95475 1.00906 1.00928 1.20852 0.94682 0.99442 0.91628 0.89970 1.20996 0.95505 0.95937 0.94227 1.20630 1.00520 1.00242 0.92292 1.20929 0.97034 0.97589 0.98761 1.20903 0.98428 1.00405 0.95671 1.20685 0.99837 0.99206 0.92790 1.21889 0.96431 0.96056 0.98613 1.21525 0.90829 0.93446 0.85849 0.93671 1.86945 1.15561 1.46966 1.82213 1.19639 0.89667 0.95194 0.92279 0.94250 1.21583 1.46814 0.93403 0.98435 0.93311 1.25644 0.93581 0.98649 0.99755 1.70813 1.45617 1.02486 1.36117 0.83563 0.76345 0.74751 0.75662 1.21038 1.21530 1.21715 0.91936 0.94024 0.93430 0.86794 0.86596 0.86612 0.86900 0.81318 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.98 37.16 0.33 -2.11 16 2 C -0.05 -1.03 3.00 -90.74 -0.27 -1.30 16 3 H 0.08 1.87 7.75 -51.93 -0.40 1.47 16 4 C -0.07 -1.32 5.61 -104.21 -0.58 -1.90 16 5 C -0.12 -1.98 9.79 -39.53 -0.39 -2.37 16 6 C -0.13 -1.85 10.05 -39.62 -0.40 -2.25 16 7 C -0.14 -2.03 10.05 -39.62 -0.40 -2.43 16 8 C -0.11 -1.83 10.04 -39.54 -0.40 -2.22 16 9 C -0.13 -2.62 5.81 -104.21 -0.61 -3.23 16 10 C 0.14 3.34 3.30 -26.84 -0.09 3.25 16 11 H 0.05 1.10 7.06 -51.93 -0.37 0.73 16 12 O -0.52 -12.38 12.10 -35.23 -0.43 -12.81 16 13 C 0.05 1.27 2.03 -90.36 -0.18 1.08 16 14 H 0.04 1.04 7.67 -51.93 -0.40 0.64 16 15 C -0.56 -15.81 7.53 -34.44 -0.26 -16.07 16 16 H 0.05 1.38 7.61 -52.49 -0.40 0.98 16 17 C 0.03 0.79 5.22 -17.82 -0.09 0.69 16 18 N -0.91 -27.34 13.49 55.43 0.75 -26.60 16 19 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.11 1.66 8.00 -52.49 -0.42 1.24 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.34 6.58 9.12 45.56 0.42 6.99 16 31 H 0.27 7.84 5.76 -40.82 -0.24 7.61 16 LS Contribution 259.71 15.07 3.91 3.91 Total: -1.00 -31.27 259.71 -7.32 -38.59 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -3.14 Total: 5.09 kcal Atomic # 6 Polarization: -25.51 SS G_CDS: -3.33 Total: -28.84 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.75 Total: -26.60 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.43 Total: -12.81 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.27 -7.32 -38.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307324756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.821 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds