Wall clock time and date at job start Mon Mar 30 2020 02:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.26599 * 2 1 4 4 C 1.51364 * 110.38814 * 237.86867 * 2 1 3 5 5 C 1.38507 * 130.39204 * 43.87682 * 4 2 1 6 6 C 1.38105 * 120.21398 * 180.02562 * 5 4 2 7 7 C 1.38258 * 119.93700 * 359.97438 * 6 5 4 8 8 C 1.38107 * 119.93016 * 359.97438 * 7 6 5 9 9 C 1.38215 * 109.76102 * 223.85308 * 4 2 1 10 10 C 1.51366 * 109.75668 * 359.97438 * 9 4 2 11 11 H 1.08997 * 110.30216 * 136.12045 * 10 9 4 12 12 O 1.42902 * 110.30601 * 258.26919 * 10 9 4 13 13 C 1.54343 * 110.30289 * 122.06768 * 2 1 3 14 14 H 1.09002 * 110.82506 * 26.94697 * 13 2 1 15 15 C 1.50702 * 110.82810 * 263.58982 * 13 2 1 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 13 2 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 13 2 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 13 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 H 1.08995 * 109.47243 * 297.92690 * 1 2 3 24 24 H 1.08999 * 109.47219 * 57.93024 * 1 2 3 25 25 H 1.08996 * 109.46610 * 177.92784 * 1 2 3 26 26 H 1.07996 * 119.89262 * 359.95303 * 5 4 2 27 27 H 1.07995 * 120.03257 * 179.97438 * 6 5 4 28 28 H 1.07993 * 120.03373 * 180.02562 * 7 6 5 29 29 H 1.07999 * 119.88826 * 179.97438 * 8 7 6 30 30 H 0.96703 * 114.00179 * 295.75516 * 12 10 9 31 31 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0573 -0.7546 -1.2015 5 6 1.6572 -0.7238 -2.5272 6 6 2.2954 -1.5125 -3.4642 7 6 3.3374 -2.3355 -3.0789 8 6 3.7384 -2.3667 -1.7577 9 6 3.0994 -1.5769 -0.8164 10 6 3.3440 -1.4307 0.6702 11 1 3.4925 -2.4091 1.1271 12 8 4.4789 -0.5949 0.9062 13 6 2.0656 -0.7685 1.2267 14 1 1.3483 -1.5200 1.5566 15 6 2.3990 0.1798 2.3495 16 1 2.2495 1.2417 2.2216 17 6 2.8948 -0.3083 3.5398 18 7 3.0763 -1.6015 3.6956 19 14 3.3151 0.8679 4.9288 20 1 3.8322 0.0990 6.0891 21 1 4.3517 1.8267 4.4688 22 1 2.0958 1.6132 5.3324 23 1 -0.3633 0.4813 0.9079 24 1 -0.3633 0.5456 -0.8708 25 1 -0.3632 -1.0270 -0.0372 26 1 0.8429 -0.0818 -2.8288 27 1 1.9807 -1.4865 -4.4970 28 1 3.8377 -2.9526 -3.8104 29 1 4.5521 -3.0101 -1.4573 30 1 5.3117 -0.9604 0.5775 31 1 2.8576 -2.2123 2.9745 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307324756.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:23 Heat of formation + Delta-G solvation = -53.060987 kcal Electronic energy + Delta-G solvation = -14787.321996 eV Core-core repulsion = 12418.123717 eV Total energy + Delta-G solvation = -2369.198279 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30804 -37.95237 -36.06218 -34.46841 -32.24439 -30.55212 -29.34215 -26.48462 -25.01646 -23.13939 -21.75084 -21.01332 -19.03404 -18.26789 -17.02854 -16.47983 -15.86964 -15.60385 -15.10075 -14.93648 -14.43230 -14.29205 -14.14165 -13.52277 -13.08245 -13.00683 -12.65910 -12.60735 -12.36784 -12.13699 -11.93843 -11.53419 -11.13118 -10.74089 -10.58286 -10.43446 -9.76773 -9.49643 -8.51817 -6.19249 0.41607 0.48008 1.52950 1.62200 1.79918 2.61586 2.83015 3.27860 3.58714 3.73205 3.84596 4.04759 4.17522 4.23707 4.34734 4.46464 4.54073 4.68504 4.72444 4.93826 5.01092 5.09051 5.10877 5.25141 5.30084 5.50448 5.55921 5.57195 5.86719 6.09223 6.12084 6.26065 6.67508 7.09129 7.56904 8.87672 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.043636 B = 0.009617 C = 0.008483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.514909 B = 2910.826358 C = 3299.745069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.044 4.044 3 H 0.060 0.940 4 C -0.090 4.090 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.126 4.126 8 C -0.113 4.113 9 C -0.157 4.157 10 C 0.150 3.850 11 H 0.020 0.980 12 O -0.542 6.542 13 C 0.037 3.963 14 H 0.013 0.987 15 C -0.573 4.573 16 H 0.037 0.963 17 C -0.022 4.022 18 N -0.938 5.938 19 Si 1.110 2.890 20 H -0.285 1.285 21 H -0.280 1.280 22 H -0.270 1.270 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.138 0.862 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.127 0.873 30 H 0.363 0.637 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.105 -0.265 -13.345 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.062 4.062 3 H 0.078 0.922 4 C -0.090 4.090 5 C -0.138 4.138 6 C -0.131 4.131 7 C -0.144 4.144 8 C -0.131 4.131 9 C -0.158 4.158 10 C 0.091 3.909 11 H 0.038 0.962 12 O -0.345 6.345 13 C 0.018 3.982 14 H 0.031 0.969 15 C -0.611 4.611 16 H 0.056 0.944 17 C -0.220 4.220 18 N -0.576 5.576 19 Si 0.933 3.067 20 H -0.210 1.210 21 H -0.206 1.206 22 H -0.196 1.196 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.156 0.844 27 H 0.177 0.823 28 H 0.174 0.826 29 H 0.145 0.855 30 H 0.208 0.792 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.002 0.199 -11.519 11.564 hybrid contribution 0.031 -0.652 -1.394 1.540 sum -0.972 -0.453 -12.913 12.958 Atomic orbital electron populations 1.21629 0.93378 1.01376 1.01858 1.20633 0.96493 0.97821 0.91247 0.92151 1.20909 0.96237 0.96677 0.95150 1.20935 1.01161 1.00753 0.90919 1.21458 0.95701 0.95560 1.00332 1.21384 0.97943 0.99953 0.95076 1.20932 1.00048 0.98720 0.93423 1.21604 0.98434 0.98829 0.96906 1.21193 0.89589 0.91591 0.88546 0.96184 1.86848 1.16855 1.47818 1.83018 1.19590 0.90511 0.94694 0.93377 0.96927 1.21866 1.46155 0.93346 0.99688 0.94423 1.26953 0.93318 0.99299 1.02383 1.70912 1.47531 1.03172 1.35942 0.83021 0.77126 0.73348 0.73192 1.21031 1.20595 1.19570 0.93174 0.90678 0.93305 0.84416 0.82286 0.82629 0.85490 0.79236 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 8.98 71.98 0.65 -3.93 16 2 C -0.04 -1.91 3.00 -10.87 -0.03 -1.94 16 3 H 0.06 2.84 7.75 -2.38 -0.02 2.82 16 4 C -0.09 -3.47 5.61 -19.59 -0.11 -3.58 16 5 C -0.12 -3.58 9.79 22.30 0.22 -3.36 16 6 C -0.11 -2.75 10.05 22.24 0.22 -2.52 16 7 C -0.13 -3.17 10.05 22.24 0.22 -2.95 16 8 C -0.11 -3.63 10.04 22.30 0.22 -3.40 16 9 C -0.16 -6.36 5.81 -19.60 -0.11 -6.47 16 10 C 0.15 7.33 3.30 30.52 0.10 7.43 16 11 H 0.02 1.05 7.06 -2.39 -0.02 1.03 16 12 O -0.54 -27.00 12.10 -148.98 -1.80 -28.80 16 13 C 0.04 1.93 2.03 -10.62 -0.02 1.91 16 14 H 0.01 0.72 7.67 -2.39 -0.02 0.70 16 15 C -0.57 -33.40 7.53 25.60 0.19 -33.21 16 16 H 0.04 2.21 7.61 -2.91 -0.02 2.19 16 17 C -0.02 -1.28 5.22 84.65 0.44 -0.83 16 18 N -0.94 -58.33 13.49 21.45 0.29 -58.04 16 19 Si 1.11 52.74 29.90 68.60 2.05 54.79 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.14 3.40 8.00 -2.91 -0.02 3.37 16 27 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.36 14.34 9.12 -74.06 -0.68 13.66 16 31 H 0.25 15.93 5.76 -92.70 -0.53 15.39 16 Total: -1.00 -70.35 259.71 3.21 -67.13 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.68 Total: 17.79 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 1.99 Total: -52.87 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.29 Total: -58.04 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -1.80 Total: -28.80 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.05 Total: 54.79 kcal Total: -70.35 3.21 -67.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307324756.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.070 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds