Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47173 * 2 1 4 4 O 1.21251 * 119.99702 * 359.97438 * 3 2 1 5 5 C 1.47215 * 120.00207 * 180.02562 * 3 2 1 6 6 C 1.40171 * 120.05223 * 359.97438 * 5 3 2 7 7 C 1.38259 * 120.33108 * 180.25604 * 6 5 3 8 8 C 1.37791 * 120.44470 * 359.44291 * 7 6 5 9 9 C 1.50701 * 119.95588 * 180.27532 * 8 7 6 10 10 C 1.40776 * 120.09360 * 0.56002 * 8 7 6 11 11 C 1.41451 * 120.16559 * 179.69907 * 10 8 7 12 12 H 1.08005 * 120.00058 * 333.69031 * 11 10 8 13 13 C 1.39932 * 120.00297 * 153.68643 * 11 10 8 14 14 N 1.30838 * 119.99619 * 343.99866 * 13 11 10 15 15 Si 1.86794 * 120.00329 * 163.99844 * 13 11 10 16 16 H 1.48505 * 109.47230 * 90.00265 * 15 13 11 17 17 H 1.48503 * 109.47425 * 210.00133 * 15 13 11 18 18 H 1.48498 * 109.47283 * 330.00201 * 15 13 11 19 19 C 1.39289 * 120.05489 * 179.97438 * 5 3 2 20 20 H 1.09000 * 109.47171 * 300.00130 * 1 2 3 21 21 H 1.08998 * 109.47350 * 59.99717 * 1 2 3 22 22 H 1.09002 * 109.47354 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46622 * 240.00364 * 2 1 3 24 24 H 1.08998 * 109.47350 * 120.00283 * 2 1 3 25 25 H 1.08003 * 119.83896 * 359.97438 * 6 5 3 26 26 H 1.08004 * 119.77717 * 179.72617 * 7 6 5 27 27 H 1.09000 * 109.47359 * 270.28228 * 9 8 7 28 28 H 1.09007 * 109.46628 * 30.28197 * 9 8 7 29 29 H 1.09001 * 109.47265 * 150.27601 * 9 8 7 30 30 H 0.97000 * 119.99215 * 179.97438 * 14 13 11 31 31 H 1.08002 * 120.21545 * 359.97438 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3424 -0.0005 5 6 3.4797 1.6899 -0.0006 6 6 4.3915 0.6253 -0.0006 7 6 5.7521 0.8714 0.0042 8 6 6.2277 2.1645 -0.0025 9 6 7.7129 2.4200 -0.0034 10 6 5.3283 3.2475 -0.0024 11 6 5.8149 4.5757 -0.0029 12 1 6.7882 4.7943 0.4113 13 6 5.0356 5.6063 -0.5400 14 7 4.0181 5.3225 -1.3121 15 14 5.4477 7.3870 -0.1547 16 1 6.3941 7.9077 -1.1738 17 1 4.2040 8.1983 -0.1739 18 1 6.0726 7.4707 1.1897 19 6 3.9452 3.0026 -0.0011 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 4.0296 -0.3923 0.0003 26 1 6.4467 0.0443 0.0087 27 1 8.0716 2.4821 1.0240 28 1 8.2215 1.6042 -0.5172 29 1 7.9199 3.3585 -0.5179 30 1 3.4777 6.0370 -1.6841 31 1 3.2472 3.8268 -0.0015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307361003.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -42.257027 kcal Electronic energy + Delta-G solvation = -14195.895824 eV Core-core repulsion = 11827.166040 eV Total energy + Delta-G solvation = -2368.729784 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.94884 -37.23625 -33.75425 -32.47258 -31.52410 -29.59613 -26.83843 -25.59368 -23.58350 -21.09758 -20.59903 -18.62128 -17.07824 -15.70547 -15.07736 -14.85780 -14.51132 -13.88538 -13.47910 -12.94308 -12.74748 -12.49981 -12.44081 -11.93777 -11.58543 -11.37692 -11.15033 -11.09883 -10.93753 -10.81349 -10.63424 -10.36278 -9.92789 -9.56705 -9.22739 -8.71567 -7.50643 -7.42199 -6.79122 -4.40733 1.93516 2.80692 3.06775 3.09298 3.14086 3.52786 3.91068 4.59739 4.82173 5.39827 5.42797 5.55956 5.73014 6.01891 6.06863 6.24000 6.25971 6.30085 6.35926 6.43923 6.59470 6.63501 6.85684 7.02271 7.10265 7.26405 7.43194 7.73245 7.79194 7.95022 8.16987 8.45419 8.50018 8.81194 8.84545 10.15555 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027109 B = 0.009906 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.610865 B = 2825.904507 C = 3764.599069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.168 4.168 3 C 0.395 3.605 4 O -0.472 6.472 5 C -0.168 4.168 6 C -0.199 4.199 7 C -0.103 4.103 8 C -0.178 4.178 9 C -0.088 4.088 10 C 0.096 3.904 11 C -0.458 4.458 12 H 0.083 0.917 13 C 0.072 3.928 14 N -0.789 5.789 15 Si 0.909 3.091 16 H -0.269 1.269 17 H -0.275 1.275 18 H -0.260 1.260 19 C -0.087 4.087 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.283 0.717 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.384 -5.517 1.533 5.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.206 4.206 3 C 0.275 3.725 4 O -0.349 6.349 5 C -0.169 4.169 6 C -0.218 4.218 7 C -0.121 4.121 8 C -0.179 4.179 9 C -0.145 4.145 10 C 0.093 3.907 11 C -0.487 4.487 12 H 0.101 0.899 13 C -0.146 4.146 14 N -0.414 5.414 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.184 1.184 19 C -0.106 4.106 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.988 -4.917 1.380 5.202 hybrid contribution 0.216 0.656 0.019 0.691 sum -0.773 -4.261 1.399 4.551 Atomic orbital electron populations 1.21577 0.94675 1.00815 1.02781 1.21948 0.97143 0.97442 1.04018 1.22621 0.89242 0.89995 0.70612 1.90437 1.58794 1.47945 1.37716 1.20074 0.92656 0.95227 1.08947 1.20525 0.92914 0.96094 1.12315 1.20356 0.94456 0.95329 1.01983 1.19940 0.94755 0.92812 1.10427 1.20455 0.93170 1.00991 0.99861 1.17473 0.90842 0.92654 0.89684 1.19565 1.03272 0.91204 1.34638 0.89941 1.25961 0.93956 1.01895 0.92789 1.69787 1.14404 1.35615 1.21593 0.86299 0.78918 0.81362 0.80131 1.19441 1.20018 1.18411 1.21792 0.96253 0.94344 0.98229 0.92458 0.92404 0.92802 0.88996 0.89024 0.88539 0.88897 0.93745 0.94155 0.91806 0.90549 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.20 37.16 0.34 -1.66 16 2 C -0.17 -2.64 5.02 -27.88 -0.14 -2.78 16 3 C 0.40 8.42 7.12 -30.66 -0.22 8.20 16 4 O -0.47 -11.39 15.96 5.58 0.09 -11.30 16 5 C -0.17 -3.95 5.86 -105.13 -0.62 -4.57 16 6 C -0.20 -4.21 9.48 -38.85 -0.37 -4.58 16 7 C -0.10 -2.22 9.65 -39.74 -0.38 -2.60 16 8 C -0.18 -4.17 5.94 -103.83 -0.62 -4.79 16 9 C -0.09 -1.76 9.39 36.01 0.34 -1.42 16 10 C 0.10 2.52 5.56 -106.88 -0.59 1.93 16 11 C -0.46 -11.87 8.10 -37.73 -0.31 -12.18 16 12 H 0.08 2.03 6.88 -52.48 -0.36 1.66 16 13 C 0.07 1.82 5.16 -17.34 -0.09 1.73 16 14 N -0.79 -20.88 10.97 55.55 0.61 -20.27 16 15 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 19 C -0.09 -2.31 8.23 -38.35 -0.32 -2.63 16 20 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 21 H 0.06 0.87 8.10 -51.93 -0.42 0.44 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 24 H 0.09 1.28 8.08 -51.93 -0.42 0.86 16 25 H 0.10 1.71 7.02 -52.48 -0.37 1.34 16 26 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 29 H 0.06 1.31 6.77 -51.93 -0.35 0.96 16 30 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 31 H 0.13 3.75 5.81 -52.49 -0.30 3.45 16 LS Contribution 266.11 15.07 4.01 4.01 Total: -1.00 -28.42 266.11 -7.18 -35.60 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.89 Total: 3.59 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -2.97 Total: -25.34 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.42 -7.18 -35.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307361003.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.660 kcal (2) G-P(sol) polarization free energy of solvation -28.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds