Wall clock time and date at job start Mon Mar 30 2020 02:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47173 * 2 1 4 4 O 1.21251 * 119.99702 * 359.97438 * 3 2 1 5 5 C 1.47215 * 120.00207 * 180.02562 * 3 2 1 6 6 C 1.40171 * 120.05223 * 359.97438 * 5 3 2 7 7 C 1.38259 * 120.33108 * 180.25604 * 6 5 3 8 8 C 1.37791 * 120.44470 * 359.44291 * 7 6 5 9 9 C 1.50701 * 119.95588 * 180.27532 * 8 7 6 10 10 C 1.40776 * 120.09360 * 0.56002 * 8 7 6 11 11 C 1.41451 * 120.16559 * 179.69907 * 10 8 7 12 12 H 1.08005 * 120.00058 * 333.69031 * 11 10 8 13 13 C 1.39932 * 120.00297 * 153.68643 * 11 10 8 14 14 N 1.30838 * 119.99619 * 343.99866 * 13 11 10 15 15 Si 1.86794 * 120.00329 * 163.99844 * 13 11 10 16 16 H 1.48505 * 109.47230 * 90.00265 * 15 13 11 17 17 H 1.48503 * 109.47425 * 210.00133 * 15 13 11 18 18 H 1.48498 * 109.47283 * 330.00201 * 15 13 11 19 19 C 1.39289 * 120.05489 * 179.97438 * 5 3 2 20 20 H 1.09000 * 109.47171 * 300.00130 * 1 2 3 21 21 H 1.08998 * 109.47350 * 59.99717 * 1 2 3 22 22 H 1.09002 * 109.47354 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46622 * 240.00364 * 2 1 3 24 24 H 1.08998 * 109.47350 * 120.00283 * 2 1 3 25 25 H 1.08003 * 119.83896 * 359.97438 * 6 5 3 26 26 H 1.08004 * 119.77717 * 179.72617 * 7 6 5 27 27 H 1.09000 * 109.47359 * 270.28228 * 9 8 7 28 28 H 1.09007 * 109.46628 * 30.28197 * 9 8 7 29 29 H 1.09001 * 109.47265 * 150.27601 * 9 8 7 30 30 H 0.97000 * 119.99215 * 179.97438 * 14 13 11 31 31 H 1.08002 * 120.21545 * 359.97438 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3424 -0.0005 5 6 3.4797 1.6899 -0.0006 6 6 4.3915 0.6253 -0.0006 7 6 5.7521 0.8714 0.0042 8 6 6.2277 2.1645 -0.0025 9 6 7.7129 2.4200 -0.0034 10 6 5.3283 3.2475 -0.0024 11 6 5.8149 4.5757 -0.0029 12 1 6.7882 4.7943 0.4113 13 6 5.0356 5.6063 -0.5400 14 7 4.0181 5.3225 -1.3121 15 14 5.4477 7.3870 -0.1547 16 1 6.3941 7.9077 -1.1738 17 1 4.2040 8.1983 -0.1739 18 1 6.0726 7.4707 1.1897 19 6 3.9452 3.0026 -0.0011 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 4.0296 -0.3923 0.0003 26 1 6.4467 0.0443 0.0087 27 1 8.0716 2.4821 1.0240 28 1 8.2215 1.6042 -0.5172 29 1 7.9199 3.3585 -0.5179 30 1 3.4777 6.0370 -1.6841 31 1 3.2472 3.8268 -0.0015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307361003.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:10 Heat of formation + Delta-G solvation = -57.660430 kcal Electronic energy + Delta-G solvation = -14196.563766 eV Core-core repulsion = 11827.166040 eV Total energy + Delta-G solvation = -2369.397726 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66446 -39.01063 -35.59083 -33.94567 -33.11648 -31.42827 -28.48107 -27.38140 -25.07957 -22.88146 -22.23412 -20.34290 -18.84568 -17.49305 -16.76451 -16.28015 -16.18867 -15.64732 -15.18875 -14.66174 -14.34254 -14.21615 -14.00554 -13.32509 -13.14430 -12.86219 -12.77486 -12.74439 -12.49944 -12.30464 -12.09308 -11.99347 -11.74157 -11.33688 -11.06960 -10.39452 -9.35559 -9.23325 -8.63926 -6.34721 0.17134 1.02543 1.34586 1.43397 1.49763 1.81025 2.17997 2.76908 3.32771 3.66312 4.13047 4.30873 4.36846 4.49653 4.63643 4.68684 4.83433 4.96875 5.03957 5.06444 5.08370 5.11384 5.19929 5.30920 5.36533 5.43611 5.64922 5.92532 5.95770 6.11560 6.33426 6.60796 6.81328 6.92222 6.98850 8.32626 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.027109 B = 0.009906 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.610865 B = 2825.904507 C = 3764.599069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.157 4.157 3 C 0.388 3.612 4 O -0.514 6.514 5 C -0.187 4.187 6 C -0.176 4.176 7 C -0.110 4.110 8 C -0.182 4.182 9 C -0.085 4.085 10 C 0.059 3.941 11 C -0.490 4.490 12 H 0.086 0.914 13 C 0.027 3.973 14 N -0.834 5.834 15 Si 0.979 3.021 16 H -0.257 1.257 17 H -0.275 1.275 18 H -0.255 1.255 19 C -0.130 4.130 20 H 0.044 0.956 21 H 0.041 0.959 22 H 0.092 0.908 23 H 0.117 0.883 24 H 0.121 0.879 25 H 0.145 0.855 26 H 0.136 0.864 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.284 0.716 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.596 -8.195 1.921 8.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.193 4.193 3 C 0.271 3.729 4 O -0.394 6.394 5 C -0.188 4.188 6 C -0.195 4.195 7 C -0.128 4.128 8 C -0.184 4.184 9 C -0.142 4.142 10 C 0.057 3.943 11 C -0.520 4.520 12 H 0.104 0.896 13 C -0.187 4.187 14 N -0.460 5.460 15 Si 0.800 3.200 16 H -0.182 1.182 17 H -0.200 1.200 18 H -0.178 1.178 19 C -0.150 4.150 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.111 0.889 23 H 0.135 0.865 24 H 0.139 0.861 25 H 0.162 0.838 26 H 0.154 0.846 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.011 -7.621 1.771 7.824 hybrid contribution -0.070 1.271 -0.083 1.275 sum -0.059 -6.351 1.688 6.571 Atomic orbital electron populations 1.21594 0.93697 1.02887 1.01514 1.21981 0.97980 0.92999 1.06383 1.23374 0.88084 0.92485 0.68962 1.90423 1.59352 1.50023 1.39560 1.20555 0.94929 0.94809 1.08490 1.21077 0.92530 0.97471 1.08401 1.20874 0.95514 0.95654 1.00784 1.20491 0.96297 0.93162 1.08448 1.20473 0.91149 1.01495 1.01056 1.17863 0.91391 0.94013 0.90998 1.19806 1.03949 0.92113 1.36135 0.89595 1.26838 0.93590 1.06136 0.92125 1.69900 1.16005 1.36724 1.23402 0.85244 0.78676 0.75903 0.80188 1.18193 1.20002 1.17837 1.21645 0.96235 0.95088 1.02042 0.93662 0.93955 0.88893 0.86477 0.86093 0.83753 0.84640 0.92205 0.91133 0.93171 0.90597 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.20 71.98 0.66 -2.94 16 2 C -0.16 -4.36 5.02 29.85 0.15 -4.21 16 3 C 0.39 16.41 7.12 28.05 0.20 16.61 16 4 O -0.51 -25.80 15.96 -2.94 -0.05 -25.84 16 5 C -0.19 -8.77 5.86 -20.20 -0.12 -8.89 16 6 C -0.18 -6.84 9.48 22.74 0.22 -6.62 16 7 C -0.11 -4.36 9.65 22.17 0.21 -4.14 16 8 C -0.18 -8.36 5.94 -19.35 -0.11 -8.48 16 9 C -0.09 -3.23 9.39 71.24 0.67 -2.56 16 10 C 0.06 3.22 5.56 -21.33 -0.12 3.10 16 11 C -0.49 -26.55 8.10 23.47 0.19 -26.36 16 12 H 0.09 4.37 6.88 -2.91 -0.02 4.35 16 13 C 0.03 1.41 5.16 85.25 0.44 1.85 16 14 N -0.83 -47.10 10.97 21.82 0.24 -46.86 16 15 Si 0.98 40.05 29.59 68.60 2.03 42.08 16 16 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 17 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 19 C -0.13 -7.28 8.23 23.06 0.19 -7.09 16 20 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 21 H 0.04 1.21 8.10 -2.39 -0.02 1.19 16 22 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.12 2.75 8.08 -2.39 -0.02 2.73 16 24 H 0.12 2.73 8.08 -2.39 -0.02 2.71 16 25 H 0.14 4.21 7.02 -2.91 -0.02 4.19 16 26 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 27 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.22 8.09 -2.38 -0.02 2.20 16 29 H 0.05 2.02 6.77 -2.39 -0.02 2.01 16 30 H 0.28 14.83 8.30 -92.71 -0.77 14.06 16 31 H 0.09 5.84 5.81 -2.91 -0.02 5.82 16 Total: -1.00 -66.79 266.11 5.92 -60.87 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.12 Total: 19.48 kcal Atomic # 6 Polarization: -52.30 SS G_CDS: 2.58 Total: -49.72 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.24 Total: -46.86 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.08 kcal Total: -66.79 5.92 -60.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307361003.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.211 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds