Wall clock time and date at job start Mon Mar 30 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47274 * 2 1 4 4 O 1.21338 * 119.99448 * 359.97438 * 3 2 1 5 5 C 1.46597 * 120.00112 * 179.97438 * 3 2 1 6 6 C 1.39690 * 120.58767 * 354.51174 * 5 3 2 7 7 C 1.38020 * 120.02007 * 180.02562 * 6 5 3 8 8 C 1.38724 * 121.30483 * 359.95370 * 7 6 5 9 9 C 1.37503 * 121.23133 * 359.78114 * 8 7 6 10 10 C 1.50700 * 120.07357 * 180.24382 * 9 8 7 11 11 C 1.40835 * 119.85776 * 0.49911 * 9 8 7 12 12 C 1.40725 * 120.61559 * 179.76109 * 11 9 8 13 13 H 1.08003 * 119.99238 * 131.76608 * 12 11 9 14 14 C 1.40392 * 120.00520 * 311.49351 * 12 11 9 15 15 N 1.30564 * 119.99937 * 342.12851 * 14 12 11 16 16 Si 1.86802 * 120.00247 * 162.12904 * 14 12 11 17 17 H 1.48504 * 109.46798 * 59.99877 * 16 14 12 18 18 H 1.48493 * 109.47009 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47068 * 300.00005 * 16 14 12 20 20 H 1.09008 * 109.47452 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47469 * 300.00365 * 1 2 3 22 22 H 1.09001 * 109.46942 * 60.00200 * 1 2 3 23 23 H 1.08996 * 109.47433 * 239.99130 * 2 1 3 24 24 H 1.09009 * 109.46756 * 119.99483 * 2 1 3 25 25 H 1.07997 * 119.99375 * 359.97438 * 6 5 3 26 26 H 1.07993 * 119.35018 * 179.97438 * 7 6 5 27 27 H 1.08002 * 119.38246 * 180.02562 * 8 7 6 28 28 H 1.08997 * 109.47274 * 273.84033 * 10 9 8 29 29 H 1.09007 * 109.47043 * 33.84290 * 10 9 8 30 30 H 1.08997 * 109.47192 * 153.84143 * 10 9 8 31 31 H 0.96997 * 120.00274 * 185.06560 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2438 2.3430 -0.0005 5 6 3.4736 1.6887 0.0006 6 6 4.3912 0.6417 0.1161 7 6 5.7456 0.9073 0.1159 8 6 6.2258 2.2037 0.0014 9 6 5.3699 3.2729 -0.1206 10 6 5.9202 4.6700 -0.2488 11 6 3.9777 3.0602 -0.1201 12 6 3.0872 4.1433 -0.2390 13 1 2.2733 4.0978 -0.9475 14 6 3.2532 5.2805 0.5673 15 7 3.9858 5.2146 1.6461 16 14 2.4261 6.8880 0.0969 17 1 0.9547 6.6926 0.0509 18 1 2.7556 7.9277 1.1046 19 1 2.9099 7.3214 -1.2385 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 4.0407 -0.3758 0.2065 26 1 6.4453 0.0897 0.2062 27 1 7.2920 2.3760 0.0043 28 1 6.0978 5.0831 0.7441 29 1 6.8580 4.6416 -0.8037 30 1 5.2028 5.2958 -0.7796 31 1 4.0414 5.9779 2.2420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307431865.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:12 Heat of formation + Delta-G solvation = -32.690321 kcal Electronic energy + Delta-G solvation = -14565.784846 eV Core-core repulsion = 12197.469906 eV Total energy + Delta-G solvation = -2368.314940 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.54512 -36.86097 -33.90026 -32.16060 -30.97210 -29.82542 -26.76688 -24.85288 -24.00593 -21.26012 -20.24571 -18.04976 -17.17738 -15.35383 -15.20038 -14.55895 -14.39492 -14.12370 -13.35295 -12.76771 -12.59287 -12.24417 -12.06053 -11.72635 -11.50238 -11.29741 -11.13353 -10.95743 -10.81234 -10.56689 -10.48998 -10.39807 -10.03699 -9.65170 -8.94643 -8.22924 -7.43435 -7.09823 -6.75638 -4.40698 2.10255 2.83220 3.09155 3.14150 3.19942 3.79813 3.98078 4.63323 5.12935 5.35375 5.62129 5.66906 5.94473 6.00340 6.16540 6.22423 6.34778 6.42913 6.51221 6.61372 6.73349 6.86074 6.97692 7.07879 7.17663 7.24124 7.59376 7.62305 7.79675 8.04079 8.11817 8.56429 8.73413 8.86291 9.02343 10.19439 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.013601 C = 0.009001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.524421 B = 2058.110068 C = 3110.019458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.168 4.168 3 C 0.387 3.613 4 O -0.464 6.464 5 C -0.276 4.276 6 C -0.053 4.053 7 C -0.242 4.242 8 C -0.080 4.080 9 C -0.138 4.138 10 C -0.084 4.084 11 C 0.159 3.841 12 C -0.426 4.426 13 H 0.093 0.907 14 C 0.080 3.920 15 N -0.786 5.786 16 Si 0.903 3.097 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.262 1.262 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 -4.053 -1.823 4.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.206 4.206 3 C 0.269 3.731 4 O -0.343 6.343 5 C -0.278 4.278 6 C -0.071 4.071 7 C -0.261 4.261 8 C -0.098 4.098 9 C -0.139 4.139 10 C -0.140 4.140 11 C 0.156 3.844 12 C -0.455 4.455 13 H 0.110 0.890 14 C -0.138 4.138 15 N -0.412 5.412 16 Si 0.727 3.273 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.187 1.187 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.299 -3.418 -1.650 3.807 hybrid contribution -0.154 0.470 0.075 0.501 sum -0.453 -2.948 -1.574 3.372 Atomic orbital electron populations 1.21534 0.94967 1.00290 1.02727 1.21962 0.97006 0.98582 1.03078 1.21850 0.88884 0.89211 0.73171 1.90465 1.58423 1.47110 1.38274 1.21286 0.92856 0.94605 1.19076 1.20868 0.93194 0.96443 0.96608 1.20239 0.94663 0.95675 1.15491 1.20594 0.97442 0.92935 0.98875 1.19977 0.93384 0.94150 1.06381 1.20570 0.97671 0.94856 1.00909 1.18443 0.91047 0.90334 0.84605 1.19527 1.10777 0.96965 1.18193 0.88960 1.25860 0.93822 0.99717 0.94416 1.69680 1.30944 1.32147 1.08415 0.86428 0.80894 0.80478 0.79454 1.18738 1.20355 1.18701 0.93305 0.92492 0.92536 0.89869 0.89918 0.88507 0.89014 0.89107 0.91735 0.95461 0.92232 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.20 37.16 0.34 -1.83 16 2 C -0.17 -2.90 5.12 -27.88 -0.14 -3.04 16 3 C 0.39 8.87 7.08 -30.94 -0.22 8.65 16 4 O -0.46 -12.05 13.77 5.51 0.08 -11.98 16 5 C -0.28 -6.75 6.06 -102.60 -0.62 -7.37 16 6 C -0.05 -1.13 9.47 -39.12 -0.37 -1.50 16 7 C -0.24 -5.13 9.98 -39.48 -0.39 -5.53 16 8 C -0.08 -1.79 9.63 -39.67 -0.38 -2.17 16 9 C -0.14 -3.41 5.58 -103.91 -0.58 -3.99 16 10 C -0.08 -1.89 8.30 36.01 0.30 -1.60 16 11 C 0.16 4.23 5.36 -104.59 -0.56 3.67 16 12 C -0.43 -11.53 6.52 -37.83 -0.25 -11.78 16 13 H 0.09 2.57 6.92 -52.48 -0.36 2.21 16 14 C 0.08 2.04 3.53 -17.28 -0.06 1.98 16 15 N -0.79 -20.31 10.92 55.57 0.61 -19.71 16 16 Si 0.90 19.36 29.60 -169.99 -5.03 14.33 16 17 H -0.26 -5.77 7.11 56.52 0.40 -5.36 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 20 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 21 H 0.06 0.95 8.10 -51.93 -0.42 0.52 16 22 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 23 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 24 H 0.08 1.30 7.93 -51.92 -0.41 0.89 16 25 H 0.10 1.74 7.02 -52.49 -0.37 1.37 16 26 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.06 1.50 6.95 -51.93 -0.36 1.14 16 29 H 0.03 0.53 8.11 -51.92 -0.42 0.11 16 30 H 0.06 1.39 6.21 -51.93 -0.32 1.06 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -28.58 261.48 -7.26 -35.84 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.91 Total: 2.07 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -2.94 Total: -24.49 kcal Atomic # 7 Polarization: -20.31 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.58 -7.26 -35.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307431865.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.154 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds