Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47274 * 2 1 4 4 O 1.21338 * 119.99448 * 359.97438 * 3 2 1 5 5 C 1.46597 * 120.00112 * 179.97438 * 3 2 1 6 6 C 1.39690 * 120.58767 * 354.51174 * 5 3 2 7 7 C 1.38020 * 120.02007 * 180.02562 * 6 5 3 8 8 C 1.38724 * 121.30483 * 359.95370 * 7 6 5 9 9 C 1.37503 * 121.23133 * 359.78114 * 8 7 6 10 10 C 1.50700 * 120.07357 * 180.24382 * 9 8 7 11 11 C 1.40835 * 119.85776 * 0.49911 * 9 8 7 12 12 C 1.40725 * 120.61559 * 179.76109 * 11 9 8 13 13 H 1.08003 * 119.99238 * 131.76608 * 12 11 9 14 14 C 1.40392 * 120.00520 * 311.49351 * 12 11 9 15 15 N 1.30564 * 119.99937 * 342.12851 * 14 12 11 16 16 Si 1.86802 * 120.00247 * 162.12904 * 14 12 11 17 17 H 1.48504 * 109.46798 * 59.99877 * 16 14 12 18 18 H 1.48493 * 109.47009 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47068 * 300.00005 * 16 14 12 20 20 H 1.09008 * 109.47452 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47469 * 300.00365 * 1 2 3 22 22 H 1.09001 * 109.46942 * 60.00200 * 1 2 3 23 23 H 1.08996 * 109.47433 * 239.99130 * 2 1 3 24 24 H 1.09009 * 109.46756 * 119.99483 * 2 1 3 25 25 H 1.07997 * 119.99375 * 359.97438 * 6 5 3 26 26 H 1.07993 * 119.35018 * 179.97438 * 7 6 5 27 27 H 1.08002 * 119.38246 * 180.02562 * 8 7 6 28 28 H 1.08997 * 109.47274 * 273.84033 * 10 9 8 29 29 H 1.09007 * 109.47043 * 33.84290 * 10 9 8 30 30 H 1.08997 * 109.47192 * 153.84143 * 10 9 8 31 31 H 0.96997 * 120.00274 * 185.06560 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2438 2.3430 -0.0005 5 6 3.4736 1.6887 0.0006 6 6 4.3912 0.6417 0.1161 7 6 5.7456 0.9073 0.1159 8 6 6.2258 2.2037 0.0014 9 6 5.3699 3.2729 -0.1206 10 6 5.9202 4.6700 -0.2488 11 6 3.9777 3.0602 -0.1201 12 6 3.0872 4.1433 -0.2390 13 1 2.2733 4.0978 -0.9475 14 6 3.2532 5.2805 0.5673 15 7 3.9858 5.2146 1.6461 16 14 2.4261 6.8880 0.0969 17 1 0.9547 6.6926 0.0509 18 1 2.7556 7.9277 1.1046 19 1 2.9099 7.3214 -1.2385 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 4.0407 -0.3758 0.2065 26 1 6.4453 0.0897 0.2062 27 1 7.2920 2.3760 0.0043 28 1 6.0978 5.0831 0.7441 29 1 6.8580 4.6416 -0.8037 30 1 5.2028 5.2958 -0.7796 31 1 4.0414 5.9779 2.2420 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307431865.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = -47.983260 kcal Electronic energy + Delta-G solvation = -14566.447998 eV Core-core repulsion = 12197.469906 eV Total energy + Delta-G solvation = -2368.978092 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.32239 -38.64980 -35.72985 -33.70545 -32.65639 -31.64934 -28.53809 -26.64401 -25.61880 -22.88798 -22.03121 -19.77335 -19.02230 -17.14229 -16.91794 -16.14195 -16.05911 -15.87452 -15.06198 -14.53085 -14.33049 -13.93784 -13.78308 -13.34075 -13.07310 -13.00943 -12.77916 -12.57105 -12.45513 -12.21259 -12.14722 -11.92426 -11.82356 -11.42597 -10.79725 -10.00562 -9.22382 -8.94365 -8.61495 -6.35390 0.30692 1.05836 1.32924 1.42452 1.45857 2.03821 2.20994 2.76225 3.51864 3.60278 4.26239 4.35289 4.39292 4.46123 4.62050 4.70265 4.85367 4.99545 5.00793 5.11467 5.13591 5.18523 5.25080 5.34648 5.41037 5.45117 5.79479 5.86161 6.03254 6.16107 6.34810 6.65072 6.84828 6.99503 7.26780 8.35020 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.013601 C = 0.009001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.524421 B = 2058.110068 C = 3110.019458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C 0.376 3.624 4 O -0.508 6.508 5 C -0.305 4.305 6 C -0.050 4.050 7 C -0.235 4.235 8 C -0.083 4.083 9 C -0.168 4.168 10 C -0.074 4.074 11 C 0.123 3.877 12 C -0.462 4.462 13 H 0.065 0.935 14 C 0.049 3.951 15 N -0.817 5.817 16 Si 0.958 3.042 17 H -0.275 1.275 18 H -0.261 1.261 19 H -0.255 1.255 20 H 0.088 0.912 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.140 0.860 26 H 0.132 0.868 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.933 -6.145 -1.854 6.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.195 4.195 3 C 0.261 3.739 4 O -0.389 6.389 5 C -0.307 4.307 6 C -0.068 4.068 7 C -0.254 4.254 8 C -0.102 4.102 9 C -0.169 4.169 10 C -0.131 4.131 11 C 0.120 3.880 12 C -0.491 4.491 13 H 0.083 0.917 14 C -0.166 4.166 15 N -0.444 5.444 16 Si 0.780 3.220 17 H -0.200 1.200 18 H -0.185 1.185 19 H -0.179 1.179 20 H 0.107 0.893 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.128 0.872 24 H 0.125 0.875 25 H 0.157 0.843 26 H 0.149 0.851 27 H 0.137 0.863 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.660 -5.528 -1.683 5.816 hybrid contribution -0.375 0.909 0.070 0.986 sum 0.286 -4.619 -1.613 4.901 Atomic orbital electron populations 1.21537 0.94042 1.02380 1.01311 1.21944 0.97802 0.94400 1.05357 1.22682 0.88282 0.91587 0.71368 1.90447 1.59158 1.49237 1.40036 1.21839 0.94726 0.94908 1.19247 1.21300 0.92952 0.97625 0.94929 1.20783 0.95420 0.96298 1.12897 1.21009 0.98703 0.92985 0.97482 1.20271 0.93242 0.95685 1.07708 1.20453 0.98298 0.93942 1.00365 1.18908 0.92162 0.91500 0.85402 1.19420 1.11103 0.98990 1.19560 0.91675 1.26402 0.94375 1.01904 0.93909 1.69701 1.32556 1.33071 1.09082 0.85620 0.79040 0.77463 0.79876 1.19989 1.18501 1.17883 0.89295 0.94167 0.93878 0.87154 0.87482 0.84267 0.85055 0.86330 0.92834 0.92794 0.93872 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.20 71.98 0.66 -3.32 16 2 C -0.16 -4.98 5.12 29.85 0.15 -4.83 16 3 C 0.38 17.25 7.08 27.87 0.20 17.45 16 4 O -0.51 -27.40 13.77 -3.21 -0.04 -27.45 16 5 C -0.30 -14.82 6.06 -18.56 -0.11 -14.93 16 6 C -0.05 -1.99 9.47 22.57 0.21 -1.78 16 7 C -0.24 -9.10 9.98 22.33 0.22 -8.88 16 8 C -0.08 -3.55 9.63 22.21 0.21 -3.33 16 9 C -0.17 -8.31 5.58 -19.40 -0.11 -8.41 16 10 C -0.07 -3.39 8.30 71.24 0.59 -2.80 16 11 C 0.12 6.71 5.36 -19.85 -0.11 6.60 16 12 C -0.46 -26.25 6.52 23.40 0.15 -26.10 16 13 H 0.07 3.91 6.92 -2.91 -0.02 3.89 16 14 C 0.05 2.60 3.53 85.41 0.30 2.90 16 15 N -0.82 -43.57 10.92 21.90 0.24 -43.33 16 16 Si 0.96 41.19 29.60 68.60 2.03 43.22 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 19 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 20 H 0.09 1.90 8.14 -2.38 -0.02 1.89 16 21 H 0.04 1.29 8.10 -2.39 -0.02 1.27 16 22 H 0.04 1.36 8.10 -2.39 -0.02 1.34 16 23 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 24 H 0.11 2.90 7.93 -2.38 -0.02 2.89 16 25 H 0.14 4.27 7.02 -2.91 -0.02 4.25 16 26 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 28 H 0.05 2.53 6.95 -2.39 -0.02 2.51 16 29 H 0.05 2.08 8.11 -2.38 -0.02 2.06 16 30 H 0.04 2.07 6.21 -2.39 -0.01 2.05 16 31 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 Total: -1.00 -64.99 261.48 5.72 -59.26 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.12 Total: 15.71 kcal Atomic # 6 Polarization: -49.80 SS G_CDS: 2.38 Total: -47.42 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.24 Total: -43.33 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.45 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -64.99 5.72 -59.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307431865.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.280 kcal (2) G-P(sol) polarization free energy of solvation -64.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds