Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99704 * 3 2 1 5 5 H 1.48496 * 109.47434 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.46769 * 150.00238 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47194 * 34.72134 * 10 9 7 12 12 C 1.50700 * 109.47204 * 154.72356 * 10 9 7 13 13 C 1.38673 * 120.41626 * 219.99673 * 12 10 9 14 14 C 1.38626 * 118.41889 * 180.02562 * 13 12 10 15 15 C 1.38228 * 119.15826 * 0.02562 * 14 13 12 16 16 N 1.31855 * 120.76877 * 0.02562 * 15 14 13 17 17 C 1.31883 * 121.72223 * 359.70550 * 16 15 14 18 18 C 1.52997 * 109.46691 * 274.72524 * 10 9 7 19 19 C 1.53009 * 117.50060 * 128.62296 * 18 10 9 20 20 C 1.52998 * 117.50129 * 59.99970 * 18 10 9 21 21 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 22 22 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 23 23 H 1.07993 * 120.78967 * 359.97438 * 13 12 10 24 24 H 1.08002 * 120.41862 * 180.02562 * 14 13 12 25 25 H 1.08008 * 119.61727 * 179.97438 * 15 14 13 26 26 H 1.07999 * 119.62010 * 180.30897 * 17 16 15 27 27 H 1.09002 * 115.55115 * 274.32272 * 18 10 9 28 28 H 1.09002 * 117.49257 * 359.97438 * 19 18 10 29 29 H 1.08994 * 117.49875 * 145.01541 * 19 18 10 30 30 H 1.09006 * 117.50037 * 214.97731 * 20 18 10 31 31 H 1.09000 * 117.50085 * 359.97438 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9715 -3.5490 0.5848 12 6 1.1969 -4.7342 0.6061 13 6 1.7508 -5.6820 1.4534 14 6 0.9204 -6.6548 1.9879 15 6 -0.4225 -6.6482 1.6604 16 7 -0.9147 -5.7317 0.8502 17 6 -0.1555 -4.7883 0.3276 18 6 2.4162 -4.0389 -1.4381 19 6 3.8758 -4.3903 -1.7333 20 6 3.2920 -3.0663 -2.2305 21 1 -0.4851 0.8400 0.0004 22 1 0.3557 -2.3881 0.0039 23 1 2.8042 -5.6631 1.6905 24 1 1.3177 -7.4084 2.6518 25 1 -1.0762 -7.4029 2.0723 26 1 -0.5953 -4.0515 -0.3282 27 1 1.6466 -4.5834 -1.9853 28 1 4.5811 -4.3488 -0.9033 29 1 4.0667 -5.1662 -2.4746 30 1 3.0988 -2.9712 -3.2991 31 1 3.6129 -2.1540 -1.7278 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389262845.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = 70.835775 kcal Electronic energy + Delta-G solvation = -14297.022584 eV Core-core repulsion = 11965.489623 eV Total energy + Delta-G solvation = -2331.532961 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.87970 -37.26409 -33.98853 -32.44759 -31.55411 -29.75150 -26.09484 -23.56595 -22.78684 -21.97147 -21.68077 -19.55554 -17.51708 -16.63131 -15.76400 -15.27272 -14.83634 -14.10342 -14.01679 -13.55618 -13.25869 -12.98347 -12.71526 -11.96116 -11.43821 -11.33416 -10.95403 -10.88430 -10.83596 -10.15504 -9.98324 -9.73549 -9.41662 -9.29540 -9.01927 -8.99328 -8.51817 -7.04003 -5.80400 -3.09539 1.49073 1.63982 3.41106 3.46151 3.48055 4.17948 4.41217 4.59126 4.79315 5.08528 5.18944 5.30772 5.41946 5.46705 5.56206 5.60902 5.72965 5.88600 6.00869 6.11554 6.15470 6.22565 6.40755 6.46109 6.55574 6.69291 6.85003 6.98140 7.08470 7.65127 8.33478 8.36904 9.48043 10.01731 10.37216 11.41851 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.028853 B = 0.009104 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.187029 B = 3074.671637 C = 3680.143789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.244 3.756 11 H 0.059 0.941 12 C -0.112 4.112 13 C -0.075 4.075 14 C -0.177 4.177 15 C 0.079 3.921 16 N -0.486 5.486 17 C 0.111 3.889 18 C -0.157 4.157 19 C -0.196 4.196 20 C -0.156 4.156 21 H 0.256 0.744 22 H 0.385 0.615 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -11.613 0.779 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.355 5.355 10 C 0.133 3.867 11 H 0.076 0.924 12 C -0.115 4.115 13 C -0.102 4.102 14 C -0.197 4.197 15 C -0.079 4.079 16 N -0.195 5.195 17 C -0.046 4.046 18 C -0.178 4.178 19 C -0.234 4.234 20 C -0.193 4.193 21 H 0.066 0.934 22 H 0.220 0.780 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.165 0.835 26 H 0.175 0.825 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.648 -11.450 0.601 12.032 hybrid contribution 1.036 0.935 0.154 1.404 sum 4.683 -10.514 0.755 11.535 Atomic orbital electron populations 1.69654 1.05088 1.25793 1.57146 1.24735 0.95495 0.97639 1.02798 0.86226 0.78660 0.83952 0.77562 1.21631 1.21773 1.20768 1.19158 0.90875 0.83747 1.43018 0.91028 1.42480 1.05790 0.99222 1.88051 1.18670 0.93118 0.84164 0.90698 0.92361 1.21329 0.96191 0.96958 0.97040 1.21433 1.00139 0.93539 0.95045 1.22020 0.95362 1.00244 1.02110 1.22637 0.93377 0.96745 0.95104 1.67690 1.39673 1.03200 1.08913 1.22678 0.90331 0.94833 0.96767 1.23099 0.92179 1.03007 0.99532 1.22946 0.97182 0.99900 1.03362 1.22799 1.03321 0.94076 0.99119 0.93394 0.77973 0.85244 0.85424 0.83500 0.82519 0.89351 0.89550 0.90126 0.90130 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.28 8.63 -15.06 -0.13 -6.41 16 8 H 0.07 1.83 6.93 -52.48 -0.36 1.47 16 9 N -0.71 -17.26 5.05 -54.55 -0.28 -17.54 16 10 C 0.24 4.77 2.76 -69.08 -0.19 4.58 16 11 H 0.06 1.15 7.73 -51.93 -0.40 0.75 16 12 C -0.11 -2.00 4.95 -104.48 -0.52 -2.52 16 13 C -0.07 -1.12 9.82 -39.28 -0.39 -1.51 16 14 C -0.18 -2.36 10.11 -39.44 -0.40 -2.76 16 15 C 0.08 1.14 11.18 -17.55 -0.20 0.94 16 16 N -0.49 -8.61 10.36 -13.25 -0.14 -8.75 16 17 C 0.11 2.07 10.23 -17.55 -0.18 1.89 16 18 C -0.16 -2.80 5.34 -90.62 -0.48 -3.29 16 19 C -0.20 -3.00 10.18 -26.72 -0.27 -3.28 16 20 C -0.16 -2.79 9.78 -26.73 -0.26 -3.05 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.39 9.94 6.08 -40.82 -0.25 9.69 16 23 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 24 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 25 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 26 H 0.16 3.05 6.91 -52.49 -0.36 2.69 16 27 H 0.09 1.58 8.11 -51.93 -0.42 1.16 16 28 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.11 2.11 6.25 -51.93 -0.32 1.78 16 LS Contribution 266.66 15.07 4.02 4.02 Total: -1.00 -29.64 266.66 -7.59 -37.23 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -3.79 Total: 10.70 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -3.11 Total: -15.78 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.31 Total: -53.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.64 -7.59 -37.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389262845.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.069 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds