Wall clock time and date at job start Mon Mar 30 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99704 * 3 2 1 5 5 H 1.48496 * 109.47434 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.46769 * 150.00238 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47194 * 34.72134 * 10 9 7 12 12 C 1.50700 * 109.47204 * 154.72356 * 10 9 7 13 13 C 1.38673 * 120.41626 * 219.99673 * 12 10 9 14 14 C 1.38626 * 118.41889 * 180.02562 * 13 12 10 15 15 C 1.38228 * 119.15826 * 0.02562 * 14 13 12 16 16 N 1.31855 * 120.76877 * 0.02562 * 15 14 13 17 17 C 1.31883 * 121.72223 * 359.70550 * 16 15 14 18 18 C 1.52997 * 109.46691 * 274.72524 * 10 9 7 19 19 C 1.53009 * 117.50060 * 128.62296 * 18 10 9 20 20 C 1.52998 * 117.50129 * 59.99970 * 18 10 9 21 21 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 22 22 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 23 23 H 1.07993 * 120.78967 * 359.97438 * 13 12 10 24 24 H 1.08002 * 120.41862 * 180.02562 * 14 13 12 25 25 H 1.08008 * 119.61727 * 179.97438 * 15 14 13 26 26 H 1.07999 * 119.62010 * 180.30897 * 17 16 15 27 27 H 1.09002 * 115.55115 * 274.32272 * 18 10 9 28 28 H 1.09002 * 117.49257 * 359.97438 * 19 18 10 29 29 H 1.08994 * 117.49875 * 145.01541 * 19 18 10 30 30 H 1.09006 * 117.50037 * 214.97731 * 20 18 10 31 31 H 1.09000 * 117.50085 * 359.97438 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9715 -3.5490 0.5848 12 6 1.1969 -4.7342 0.6061 13 6 1.7508 -5.6820 1.4534 14 6 0.9204 -6.6548 1.9879 15 6 -0.4225 -6.6482 1.6604 16 7 -0.9147 -5.7317 0.8502 17 6 -0.1555 -4.7883 0.3276 18 6 2.4162 -4.0389 -1.4381 19 6 3.8758 -4.3903 -1.7333 20 6 3.2920 -3.0663 -2.2305 21 1 -0.4851 0.8400 0.0004 22 1 0.3557 -2.3881 0.0039 23 1 2.8042 -5.6631 1.6905 24 1 1.3177 -7.4084 2.6518 25 1 -1.0762 -7.4029 2.0723 26 1 -0.5953 -4.0515 -0.3282 27 1 1.6466 -4.5834 -1.9853 28 1 4.5811 -4.3488 -0.9033 29 1 4.0667 -5.1662 -2.4746 30 1 3.0988 -2.9712 -3.2991 31 1 3.6129 -2.1540 -1.7278 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389262845.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:51 Heat of formation + Delta-G solvation = 52.568839 kcal Electronic energy + Delta-G solvation = -14297.814698 eV Core-core repulsion = 11965.489623 eV Total energy + Delta-G solvation = -2332.325075 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.15314 -38.71335 -35.71515 -33.98055 -32.93695 -31.42634 -27.71609 -25.23165 -24.25230 -23.27010 -23.02235 -21.03143 -19.36178 -17.93869 -17.17953 -16.62740 -16.54078 -15.70100 -15.38949 -15.14373 -14.80383 -14.47763 -13.88515 -13.45518 -13.12163 -12.95222 -12.67854 -12.48732 -12.33471 -12.04374 -11.81712 -11.10281 -11.02770 -10.79608 -10.60429 -10.29003 -9.81138 -9.02568 -7.91251 -5.19486 0.26574 0.43200 1.47627 1.48846 1.56552 2.55946 2.94242 3.05953 3.45787 3.56662 3.76865 4.01213 4.09684 4.11271 4.20626 4.28361 4.38385 4.49703 4.61815 4.76374 4.87205 4.94297 5.06353 5.15085 5.24651 5.37914 5.40026 5.53504 5.58183 5.87783 6.28816 7.10226 7.35761 8.07941 8.32573 9.32363 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.028853 B = 0.009104 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.187029 B = 3074.671637 C = 3680.143789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.729 5.729 10 C 0.246 3.754 11 H 0.059 0.941 12 C -0.129 4.129 13 C -0.075 4.075 14 C -0.160 4.160 15 C 0.075 3.925 16 N -0.513 5.513 17 C 0.088 3.912 18 C -0.170 4.170 19 C -0.157 4.157 20 C -0.176 4.176 21 H 0.248 0.752 22 H 0.372 0.628 23 H 0.156 0.844 24 H 0.174 0.826 25 H 0.183 0.817 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.452 -13.879 1.695 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.193 1.193 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.137 3.863 11 H 0.077 0.923 12 C -0.132 4.132 13 C -0.101 4.101 14 C -0.179 4.179 15 C -0.083 4.083 16 N -0.222 5.222 17 C -0.068 4.068 18 C -0.191 4.191 19 C -0.195 4.195 20 C -0.213 4.213 21 H 0.057 0.943 22 H 0.205 0.795 23 H 0.174 0.826 24 H 0.192 0.808 25 H 0.200 0.800 26 H 0.147 0.853 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.703 -13.754 1.507 14.966 hybrid contribution 0.433 1.443 -0.091 1.509 sum 6.136 -12.311 1.416 13.828 Atomic orbital electron populations 1.69823 1.06619 1.25792 1.59975 1.25493 0.96238 1.00865 1.04316 0.85234 0.77799 0.80023 0.77320 1.21607 1.22725 1.19256 1.19526 0.91303 0.84631 1.39957 0.90223 1.42691 1.05433 1.00520 1.88174 1.18772 0.92837 0.82934 0.91788 0.92276 1.21172 0.95564 0.97840 0.98639 1.21789 1.01754 0.92840 0.93758 1.22484 0.94401 0.99959 1.01087 1.23347 0.94928 0.96226 0.93752 1.67650 1.40344 1.03967 1.10235 1.22353 0.91058 0.95486 0.97944 1.22909 0.93979 1.03935 0.98265 1.23029 0.94763 0.98192 1.03497 1.22762 1.04789 0.94444 0.99295 0.94268 0.79469 0.82607 0.80828 0.79970 0.85288 0.89795 0.88186 0.87503 0.89529 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.22 -11.97 8.63 84.03 0.73 -11.24 16 8 H 0.08 4.07 6.93 -2.91 -0.02 4.05 16 9 N -0.73 -36.19 5.05 -326.50 -1.65 -37.84 16 10 C 0.25 9.55 2.76 44.24 0.12 9.68 16 11 H 0.06 2.26 7.73 -2.39 -0.02 2.24 16 12 C -0.13 -4.54 4.95 -19.77 -0.10 -4.63 16 13 C -0.08 -2.02 9.82 22.47 0.22 -1.80 16 14 C -0.16 -3.57 10.11 22.36 0.23 -3.34 16 15 C 0.07 1.95 11.18 84.69 0.95 2.90 16 16 N -0.51 -17.98 10.36 -195.84 -2.03 -20.00 16 17 C 0.09 3.35 10.23 84.67 0.87 4.22 16 18 C -0.17 -5.96 5.34 -10.79 -0.06 -6.02 16 19 C -0.16 -4.37 10.18 30.60 0.31 -4.05 16 20 C -0.18 -6.16 9.78 30.59 0.30 -5.86 16 21 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 22 H 0.37 20.26 6.08 -92.70 -0.56 19.70 16 23 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 24 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 25 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 26 H 0.13 5.48 6.91 -2.91 -0.02 5.46 16 27 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 28 H 0.10 2.53 8.05 -2.39 -0.02 2.52 16 29 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 31 H 0.08 3.27 6.25 -2.39 -0.01 3.25 16 Total: -1.00 -66.07 266.66 3.23 -62.85 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.56 Total: 30.58 kcal Atomic # 6 Polarization: -28.12 SS G_CDS: 4.03 Total: -24.09 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -3.39 Total: -117.40 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -66.07 3.23 -62.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389262845.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.416 kcal (2) G-P(sol) polarization free energy of solvation -66.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds