Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00392 * 2 1 4 4 H 1.48503 * 109.46943 * 270.00141 * 3 2 1 5 5 H 1.48498 * 109.47272 * 29.99871 * 3 2 1 6 6 H 1.48500 * 109.47131 * 149.99938 * 3 2 1 7 7 C 1.37882 * 119.99377 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00206 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99697 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00140 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47390 * 179.97438 * 11 10 9 13 13 C 1.32591 * 120.00311 * 124.99813 * 12 11 10 14 14 C 1.47784 * 120.00051 * 179.97438 * 13 12 11 15 15 C 1.39966 * 120.92389 * 179.97438 * 14 13 12 16 16 C 1.37922 * 118.99764 * 180.02562 * 15 14 13 17 17 N 1.31944 * 120.90036 * 359.97438 * 16 15 14 18 18 C 1.31941 * 122.05461 * 0.02562 * 17 16 15 19 19 C 1.37931 * 120.89856 * 359.97438 * 18 17 16 20 20 H 0.97001 * 119.99429 * 0.02562 * 1 2 3 21 21 H 1.08992 * 109.47447 * 59.99562 * 9 7 2 22 22 H 1.09001 * 109.46614 * 299.99440 * 9 7 2 23 23 H 1.00905 * 110.99390 * 303.94784 * 10 9 7 24 24 H 1.09001 * 109.47098 * 59.99341 * 11 10 9 25 25 H 1.09006 * 109.47153 * 300.00199 * 11 10 9 26 26 H 1.08005 * 119.99838 * 304.99705 * 12 11 10 27 27 H 1.07995 * 119.99840 * 0.02562 * 13 12 11 28 28 H 1.08004 * 120.50253 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.55385 * 179.97438 * 16 15 14 30 30 H 1.07999 * 119.55141 * 179.97438 * 18 17 16 31 31 H 1.08005 * 120.50071 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1943 0.0000 10 7 4.0011 -2.5793 -0.0013 11 6 5.4695 -2.6186 -0.0014 12 6 5.9337 -4.0523 -0.0022 13 6 6.7644 -4.4797 -0.9430 14 6 7.2200 -5.8856 -0.9434 15 6 8.0963 -6.3575 -1.9275 16 6 8.4956 -7.6771 -1.8902 17 7 8.0634 -8.4893 -0.9444 18 6 7.2371 -8.0855 0.0017 19 6 6.7873 -6.7822 0.0403 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6810 0.8904 22 1 3.8751 -0.6799 -0.8895 23 1 3.6253 -3.0963 0.7795 24 1 5.8465 -2.1154 0.8890 25 1 5.8465 -2.1138 -0.8909 26 1 5.5897 -4.7317 0.7637 27 1 7.1087 -3.8003 -1.7086 28 1 8.4544 -5.6982 -2.7045 29 1 9.1712 -8.0508 -2.6454 30 1 6.9086 -8.7850 0.7561 31 1 6.1113 -6.4584 0.8180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389347304.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = 47.912871 kcal Electronic energy + Delta-G solvation = -13131.496095 eV Core-core repulsion = 10798.969123 eV Total energy + Delta-G solvation = -2332.526973 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.13468 -36.50621 -34.49119 -32.51382 -31.41608 -30.77615 -27.67169 -24.87869 -23.67162 -22.37404 -21.17632 -19.65025 -17.19045 -16.79999 -16.22096 -15.68498 -14.99162 -14.45775 -14.11226 -13.98581 -13.83000 -13.57701 -12.92728 -12.51977 -12.15283 -11.83464 -11.54844 -11.07783 -10.99018 -10.67659 -10.53275 -9.91257 -9.61377 -9.35680 -9.30448 -8.66443 -8.56532 -7.56477 -6.10503 -4.09209 0.73863 1.02881 2.50537 3.25190 3.32525 3.33811 3.81783 4.32439 4.37374 4.46751 4.62014 4.93332 5.01084 5.08840 5.20289 5.24693 5.44778 5.51147 5.65031 5.67097 5.82309 5.98069 6.06795 6.54237 6.61452 6.67649 6.71482 6.93255 7.51730 7.78868 7.85405 8.21183 8.58030 8.97071 9.50663 11.02697 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.069336 B = 0.004186 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.732531 B = 6687.206277 C = 6886.575642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.519 4.519 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.676 5.676 11 C 0.076 3.924 12 C -0.091 4.091 13 C -0.148 4.148 14 C 0.006 3.994 15 C -0.172 4.172 16 C 0.098 3.902 17 N -0.498 5.498 18 C 0.101 3.899 19 C -0.176 4.176 20 H 0.264 0.736 21 H -0.014 1.014 22 H 0.023 0.977 23 H 0.337 0.663 24 H 0.036 0.964 25 H 0.073 0.927 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.516 -10.601 -0.573 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.557 4.557 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.307 5.307 11 C -0.054 4.054 12 C -0.110 4.110 13 C -0.167 4.167 14 C -0.002 4.002 15 C -0.192 4.192 16 C -0.058 4.058 17 N -0.207 5.207 18 C -0.056 4.056 19 C -0.195 4.195 20 H 0.074 0.926 21 H 0.003 0.997 22 H 0.041 0.959 23 H 0.154 0.846 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.153 0.847 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 16.580 -11.403 -1.261 20.162 hybrid contribution 0.212 2.130 0.845 2.301 sum 16.792 -9.273 -0.416 19.187 Atomic orbital electron populations 1.69903 1.06170 1.26960 1.50728 1.24915 0.94776 0.98992 0.94652 0.86808 0.80201 0.83771 0.78630 1.20087 1.21134 1.19287 1.21045 0.88833 0.94895 1.50921 0.90246 1.20035 0.96800 0.84703 0.94904 1.60568 1.03425 1.17036 1.49652 1.21108 0.91351 0.92217 1.00684 1.23555 0.93432 0.97461 0.96587 1.21520 1.01754 0.92741 1.00671 1.19519 0.93456 0.93991 0.93249 1.22256 0.99468 0.97490 0.99944 1.22645 0.97264 0.90067 0.95860 1.67630 1.11446 1.38369 1.03287 1.22653 0.93001 0.94084 0.95818 1.22341 1.02155 0.94766 1.00257 0.92570 0.99655 0.95883 0.84587 0.94596 0.90822 0.86868 0.85849 0.84712 0.82913 0.82822 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.07 1.98 5.47 -17.81 -0.10 1.89 16 3 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.76 9.87 -34.44 -0.34 -15.10 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.16 3.90 4.51 -4.98 -0.02 3.88 16 10 N -0.68 -13.59 6.48 -116.34 -0.75 -14.35 16 11 C 0.08 1.19 6.13 -4.98 -0.03 1.16 16 12 C -0.09 -1.19 9.22 -36.21 -0.33 -1.52 16 13 C -0.15 -1.79 9.56 -37.58 -0.36 -2.15 16 14 C 0.01 0.07 5.90 -104.70 -0.62 -0.55 16 15 C -0.17 -1.79 9.89 -39.05 -0.39 -2.17 16 16 C 0.10 1.02 11.17 -17.62 -0.20 0.82 16 17 N -0.50 -6.01 10.35 -13.36 -0.14 -6.14 16 18 C 0.10 1.09 11.17 -17.62 -0.20 0.90 16 19 C -0.18 -1.94 9.47 -39.05 -0.37 -2.31 16 20 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 21 H -0.01 -0.34 7.20 -51.93 -0.37 -0.71 16 22 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 23 H 0.34 6.46 8.72 -39.29 -0.34 6.11 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.14 7.82 -51.93 -0.41 0.74 16 26 H 0.11 1.33 6.13 -52.48 -0.32 1.01 16 27 H 0.12 1.38 7.87 -52.49 -0.41 0.97 16 28 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.14 1.31 6.30 -52.48 -0.33 0.97 16 LS Contribution 271.64 15.07 4.09 4.09 Total: -1.00 -31.77 271.64 -7.51 -39.28 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.86 Total: 2.35 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.95 Total: -15.17 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.12 Total: -47.21 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.77 -7.51 -39.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389347304.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.191 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds