Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00392 * 2 1 4 4 H 1.48503 * 109.46943 * 270.00141 * 3 2 1 5 5 H 1.48498 * 109.47272 * 29.99871 * 3 2 1 6 6 H 1.48500 * 109.47131 * 149.99938 * 3 2 1 7 7 C 1.37882 * 119.99377 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00206 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99697 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.46894 * 111.00140 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47390 * 179.97438 * 11 10 9 13 13 C 1.32591 * 120.00311 * 124.99813 * 12 11 10 14 14 C 1.47784 * 120.00051 * 179.97438 * 13 12 11 15 15 C 1.39966 * 120.92389 * 179.97438 * 14 13 12 16 16 C 1.37922 * 118.99764 * 180.02562 * 15 14 13 17 17 N 1.31944 * 120.90036 * 359.97438 * 16 15 14 18 18 C 1.31941 * 122.05461 * 0.02562 * 17 16 15 19 19 C 1.37931 * 120.89856 * 359.97438 * 18 17 16 20 20 H 0.97001 * 119.99429 * 0.02562 * 1 2 3 21 21 H 1.08992 * 109.47447 * 59.99562 * 9 7 2 22 22 H 1.09001 * 109.46614 * 299.99440 * 9 7 2 23 23 H 1.00905 * 110.99390 * 303.94784 * 10 9 7 24 24 H 1.09001 * 109.47098 * 59.99341 * 11 10 9 25 25 H 1.09006 * 109.47153 * 300.00199 * 11 10 9 26 26 H 1.08005 * 119.99838 * 304.99705 * 12 11 10 27 27 H 1.07995 * 119.99840 * 0.02562 * 13 12 11 28 28 H 1.08004 * 120.50253 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.55385 * 179.97438 * 16 15 14 30 30 H 1.07999 * 119.55141 * 179.97438 * 18 17 16 31 31 H 1.08005 * 120.50071 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5115 -1.1943 0.0000 10 7 4.0011 -2.5793 -0.0013 11 6 5.4695 -2.6186 -0.0014 12 6 5.9337 -4.0523 -0.0022 13 6 6.7644 -4.4797 -0.9430 14 6 7.2200 -5.8856 -0.9434 15 6 8.0963 -6.3575 -1.9275 16 6 8.4956 -7.6771 -1.8902 17 7 8.0634 -8.4893 -0.9444 18 6 7.2371 -8.0855 0.0017 19 6 6.7873 -6.7822 0.0403 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6810 0.8904 22 1 3.8751 -0.6799 -0.8895 23 1 3.6253 -3.0963 0.7795 24 1 5.8465 -2.1154 0.8890 25 1 5.8465 -2.1138 -0.8909 26 1 5.5897 -4.7317 0.7637 27 1 7.1087 -3.8003 -1.7086 28 1 8.4544 -5.6982 -2.7045 29 1 9.1712 -8.0508 -2.6454 30 1 6.9086 -8.7850 0.7561 31 1 6.1113 -6.4584 0.8180 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389347304.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = 25.979146 kcal Electronic energy + Delta-G solvation = -13132.447213 eV Core-core repulsion = 10798.969123 eV Total energy + Delta-G solvation = -2333.478090 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.94962 -37.83562 -35.79760 -34.44295 -32.28979 -31.93500 -29.35116 -26.20973 -24.52627 -23.53842 -22.92143 -20.65952 -18.97749 -17.95081 -17.20927 -16.68437 -16.37409 -16.10116 -15.44979 -15.18324 -14.83981 -14.53045 -14.39862 -14.19000 -13.53402 -13.31375 -12.77382 -12.56142 -12.33145 -12.02629 -11.85160 -11.77753 -11.50487 -10.82026 -10.44367 -10.09111 -9.60899 -9.08941 -8.31113 -6.36407 -0.15224 0.24022 1.35751 1.37219 1.48090 1.56939 2.33668 2.98946 3.03013 3.45640 3.61138 3.79420 3.82177 4.12694 4.18325 4.25662 4.43561 4.49695 4.70460 4.73970 4.79510 4.92548 5.02575 5.06806 5.19506 5.49836 5.62910 5.72774 5.80271 5.92326 6.52043 6.62325 6.74218 7.05043 7.28732 8.85659 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.069336 B = 0.004186 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.732531 B = 6687.206277 C = 6886.575642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.036 0.964 9 C 0.173 3.827 10 N -0.689 5.689 11 C 0.079 3.921 12 C -0.108 4.108 13 C -0.132 4.132 14 C -0.016 4.016 15 C -0.170 4.170 16 C 0.090 3.910 17 N -0.520 5.520 18 C 0.091 3.909 19 C -0.182 4.182 20 H 0.268 0.732 21 H -0.008 1.008 22 H 0.026 0.974 23 H 0.339 0.661 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.180 0.820 30 H 0.175 0.825 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.781 -10.186 -0.888 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.055 0.945 9 C 0.044 3.956 10 N -0.319 5.319 11 C -0.049 4.049 12 C -0.127 4.127 13 C -0.151 4.151 14 C -0.024 4.024 15 C -0.190 4.190 16 C -0.066 4.066 17 N -0.230 5.230 18 C -0.065 4.065 19 C -0.201 4.201 20 H 0.077 0.923 21 H 0.009 0.991 22 H 0.044 0.956 23 H 0.156 0.844 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.141 0.859 27 H 0.152 0.848 28 H 0.175 0.825 29 H 0.197 0.803 30 H 0.192 0.808 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 18.868 -11.014 -1.573 21.904 hybrid contribution -0.481 1.841 0.904 2.107 sum 18.387 -9.173 -0.669 20.559 Atomic orbital electron populations 1.70063 1.08265 1.28310 1.52185 1.25928 0.95677 1.03477 0.94046 0.85615 0.79317 0.78092 0.79281 1.19040 1.20674 1.17169 1.21356 0.91487 0.93462 1.50706 0.94546 1.19784 0.93663 0.87055 0.95049 1.60440 1.06556 1.14837 1.50113 1.21114 0.88309 0.94260 1.01234 1.23378 0.95012 0.96294 0.98053 1.21665 1.00431 0.93100 0.99886 1.19677 0.94560 0.93914 0.94285 1.22540 0.98646 0.97886 0.99931 1.23129 0.97360 0.90092 0.96004 1.67671 1.12041 1.39245 1.04012 1.23031 0.92786 0.94536 0.96145 1.22541 1.02221 0.94908 1.00452 0.92304 0.99085 0.95568 0.84359 0.93723 0.90521 0.85925 0.84843 0.82489 0.80309 0.80785 0.83550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.01 0.36 5.47 84.65 0.46 0.83 16 3 Si 0.95 43.43 27.47 68.60 1.88 45.32 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 7 C -0.53 -30.78 9.87 25.60 0.25 -30.53 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 9 C 0.17 8.10 4.51 85.56 0.39 8.49 16 10 N -0.69 -27.21 6.48 -522.00 -3.38 -30.59 16 11 C 0.08 2.36 6.13 85.56 0.52 2.88 16 12 C -0.11 -2.65 9.22 24.53 0.23 -2.42 16 13 C -0.13 -2.93 9.56 23.64 0.23 -2.70 16 14 C -0.02 -0.35 5.90 -19.92 -0.12 -0.47 16 15 C -0.17 -3.15 9.89 22.61 0.22 -2.93 16 16 C 0.09 1.69 11.17 84.60 0.94 2.63 16 17 N -0.52 -11.71 10.35 -196.18 -2.03 -13.74 16 18 C 0.09 1.84 11.17 84.60 0.94 2.78 16 19 C -0.18 -3.75 9.47 22.61 0.21 -3.54 16 20 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 21 H -0.01 -0.39 7.20 -2.39 -0.02 -0.40 16 22 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 23 H 0.34 12.99 8.72 -89.69 -0.78 12.20 16 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 2.21 7.82 -2.38 -0.02 2.19 16 26 H 0.12 2.72 6.13 -2.91 -0.02 2.70 16 27 H 0.13 2.64 7.87 -2.91 -0.02 2.61 16 28 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.15 2.60 6.30 -2.91 -0.02 2.59 16 Total: -1.00 -68.52 271.64 1.35 -67.18 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.29 Total: 15.75 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 4.29 Total: -24.98 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -5.11 Total: -103.26 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.32 kcal Total: -68.52 1.35 -67.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389347304.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.156 kcal (2) G-P(sol) polarization free energy of solvation -68.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds