Wall clock time and date at job start Mon Mar 30 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48502 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46934 * 299.99659 * 3 2 1 6 6 H 1.48501 * 109.47160 * 59.99596 * 3 2 1 7 7 C 1.37872 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47307 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99994 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46891 * 180.02562 * 11 10 9 13 13 C 1.32592 * 119.99931 * 127.35661 * 12 11 10 14 14 C 1.47780 * 119.99899 * 8.09503 * 13 12 11 15 15 C 1.39967 * 120.92191 * 217.12656 * 14 13 12 16 16 C 1.37937 * 118.99324 * 179.75430 * 15 14 13 17 17 N 1.31937 * 120.90097 * 0.54097 * 16 15 14 18 18 C 1.31944 * 122.05327 * 359.73265 * 17 16 15 19 19 C 1.37927 * 120.90398 * 359.97438 * 18 17 16 20 20 H 0.97006 * 120.00152 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46943 * 60.00164 * 9 7 2 22 22 H 1.09001 * 109.47770 * 300.00503 * 9 7 2 23 23 H 1.00904 * 110.99605 * 303.95103 * 10 9 7 24 24 H 1.08995 * 109.47645 * 59.99710 * 11 10 9 25 25 H 1.09002 * 109.46524 * 299.99788 * 11 10 9 26 26 H 1.07999 * 120.00182 * 307.35740 * 12 11 10 27 27 H 1.08003 * 119.99730 * 188.09268 * 13 12 11 28 28 H 1.07996 * 120.50323 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.54728 * 180.27545 * 16 15 14 30 30 H 1.08004 * 119.54650 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.50277 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5053 -4.9071 0.0032 12 6 2.5149 -6.0259 0.0049 13 6 2.4410 -6.9841 0.9184 14 6 1.2727 -7.0566 1.8204 15 6 1.4203 -7.4363 3.1595 16 6 0.3035 -7.4856 3.9675 17 7 -0.8911 -7.1913 3.4910 18 6 -1.0752 -6.8343 2.2342 19 6 -0.0130 -6.7530 1.3580 20 1 -0.4851 0.8401 -0.0004 21 1 0.6240 -2.5574 -0.8880 22 1 0.6246 -2.5563 0.8919 23 1 2.8405 -3.5493 -0.7788 24 1 0.8807 -4.9821 -0.8868 25 1 0.8802 -4.9809 0.8931 26 1 3.2985 -6.0473 -0.7379 27 1 3.2347 -7.7117 1.0031 28 1 2.3945 -7.6826 3.5552 29 1 0.4078 -7.7731 5.0033 30 1 -2.0712 -6.6025 1.8867 31 1 -0.1711 -6.4597 0.3307 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389347305.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:03 Heat of formation + Delta-G solvation = 51.617229 kcal Electronic energy + Delta-G solvation = -13625.990420 eV Core-core repulsion = 11293.624081 eV Total energy + Delta-G solvation = -2332.366340 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05801 -36.50860 -34.20606 -32.35800 -31.20966 -30.39951 -27.27171 -24.74064 -23.30098 -22.73977 -21.35923 -19.38683 -16.74146 -16.25442 -15.87071 -15.64280 -15.01753 -14.59985 -14.38539 -13.71969 -13.66701 -13.16739 -12.59822 -12.54067 -11.84707 -11.51942 -11.35457 -10.99288 -10.78875 -10.63641 -10.21905 -9.90410 -9.38699 -9.21328 -9.00975 -8.61227 -8.47013 -7.35163 -6.05786 -4.08103 1.02322 1.24015 2.47594 3.29738 3.36963 3.42052 3.95336 4.41489 4.53877 4.69370 4.88344 5.06590 5.18452 5.26763 5.30281 5.51201 5.54387 5.70188 5.78686 5.92070 6.00326 6.16968 6.31094 6.58447 6.75039 6.88711 7.18576 7.36013 7.74617 8.06714 8.08223 8.32871 8.55128 9.01028 9.57059 11.05416 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.036951 B = 0.005747 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.588142 B = 4870.778346 C = 5219.704745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.685 5.685 11 C 0.063 3.937 12 C -0.097 4.097 13 C -0.151 4.151 14 C 0.002 3.998 15 C -0.169 4.169 16 C 0.095 3.905 17 N -0.493 5.493 18 C 0.098 3.902 19 C -0.164 4.164 20 H 0.261 0.739 21 H -0.013 1.013 22 H 0.028 0.972 23 H 0.328 0.672 24 H 0.032 0.968 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 -15.040 2.084 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.065 4.065 12 C -0.116 4.116 13 C -0.170 4.170 14 C -0.006 4.006 15 C -0.188 4.188 16 C -0.062 4.062 17 N -0.203 5.203 18 C -0.058 4.058 19 C -0.184 4.184 20 H 0.071 0.929 21 H 0.005 0.995 22 H 0.046 0.954 23 H 0.144 0.856 24 H 0.049 0.951 25 H 0.102 0.898 26 H 0.135 0.865 27 H 0.142 0.858 28 H 0.151 0.849 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.358 -14.936 3.337 15.364 hybrid contribution 0.874 1.023 -1.487 2.005 sum 2.231 -13.913 1.851 14.212 Atomic orbital electron populations 1.69970 1.06108 1.26762 1.50840 1.24997 0.94894 0.99433 0.95268 0.86413 0.80047 0.83240 0.77548 1.19631 1.21038 1.20941 1.21208 0.93575 0.90158 1.50427 0.91862 1.19579 0.90573 0.87287 0.95823 1.60788 1.21170 1.00731 1.48844 1.21545 0.94753 0.89468 1.00768 1.23502 0.98766 0.93598 0.95723 1.21461 0.97051 1.01613 0.96874 1.19441 0.93567 0.94047 0.93546 1.22227 1.00413 1.02306 0.93894 1.22618 0.87781 0.95881 0.99897 1.67612 1.25764 1.11519 1.15383 1.22671 0.99233 0.95010 0.88870 1.22460 0.92863 1.01001 1.02066 0.92903 0.99501 0.95425 0.85568 0.95075 0.89817 0.86462 0.85842 0.84888 0.83021 0.82764 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.75 9.32 -34.44 -0.32 -15.07 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.14 5.44 -4.97 -0.03 5.11 16 10 N -0.68 -14.80 6.48 -116.33 -0.75 -15.56 16 11 C 0.06 1.11 4.45 -4.97 -0.02 1.09 16 12 C -0.10 -1.35 9.74 -36.21 -0.35 -1.71 16 13 C -0.15 -1.92 9.84 -37.59 -0.37 -2.29 16 14 C 0.00 0.03 5.19 -104.70 -0.54 -0.51 16 15 C -0.17 -2.11 9.89 -39.04 -0.39 -2.49 16 16 C 0.09 1.21 11.17 -17.62 -0.20 1.01 16 17 N -0.49 -7.27 10.35 -13.36 -0.14 -7.41 16 18 C 0.10 1.37 11.17 -17.62 -0.20 1.17 16 19 C -0.16 -2.28 7.42 -39.05 -0.29 -2.57 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H -0.01 -0.35 8.14 -51.93 -0.42 -0.78 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.33 6.62 8.71 -39.29 -0.34 6.28 16 24 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 25 H 0.08 1.56 4.80 -51.93 -0.25 1.31 16 26 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 27 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 28 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 31 H 0.14 1.80 6.39 -52.49 -0.34 1.46 16 LS Contribution 270.65 15.07 4.08 4.08 Total: -1.00 -31.90 270.65 -7.75 -39.65 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -3.85 Total: 3.51 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.80 Total: -14.75 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.16 Total: -49.25 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.90 -7.75 -39.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389347305.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.264 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds