Wall clock time and date at job start Mon Mar 30 2020 02:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99951 * 2 1 4 4 H 1.48502 * 109.46897 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46934 * 299.99659 * 3 2 1 6 6 H 1.48501 * 109.47160 * 59.99596 * 3 2 1 7 7 C 1.37872 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00049 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47307 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99994 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46891 * 180.02562 * 11 10 9 13 13 C 1.32592 * 119.99931 * 127.35661 * 12 11 10 14 14 C 1.47780 * 119.99899 * 8.09503 * 13 12 11 15 15 C 1.39967 * 120.92191 * 217.12656 * 14 13 12 16 16 C 1.37937 * 118.99324 * 179.75430 * 15 14 13 17 17 N 1.31937 * 120.90097 * 0.54097 * 16 15 14 18 18 C 1.31944 * 122.05327 * 359.73265 * 17 16 15 19 19 C 1.37927 * 120.90398 * 359.97438 * 18 17 16 20 20 H 0.97006 * 120.00152 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46943 * 60.00164 * 9 7 2 22 22 H 1.09001 * 109.47770 * 300.00503 * 9 7 2 23 23 H 1.00904 * 110.99605 * 303.95103 * 10 9 7 24 24 H 1.08995 * 109.47645 * 59.99710 * 11 10 9 25 25 H 1.09002 * 109.46524 * 299.99788 * 11 10 9 26 26 H 1.07999 * 120.00182 * 307.35740 * 12 11 10 27 27 H 1.08003 * 119.99730 * 188.09268 * 13 12 11 28 28 H 1.07996 * 120.50323 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.54728 * 180.27545 * 16 15 14 30 30 H 1.08004 * 119.54650 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.50277 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2056 -3.6157 0.0027 11 6 1.5053 -4.9071 0.0032 12 6 2.5149 -6.0259 0.0049 13 6 2.4410 -6.9841 0.9184 14 6 1.2727 -7.0566 1.8204 15 6 1.4203 -7.4363 3.1595 16 6 0.3035 -7.4856 3.9675 17 7 -0.8911 -7.1913 3.4910 18 6 -1.0752 -6.8343 2.2342 19 6 -0.0130 -6.7530 1.3580 20 1 -0.4851 0.8401 -0.0004 21 1 0.6240 -2.5574 -0.8880 22 1 0.6246 -2.5563 0.8919 23 1 2.8405 -3.5493 -0.7788 24 1 0.8807 -4.9821 -0.8868 25 1 0.8802 -4.9809 0.8931 26 1 3.2985 -6.0473 -0.7379 27 1 3.2347 -7.7117 1.0031 28 1 2.3945 -7.6826 3.5552 29 1 0.4078 -7.7731 5.0033 30 1 -2.0712 -6.6025 1.8867 31 1 -0.1711 -6.4597 0.3307 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389347305.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:03 Heat of formation + Delta-G solvation = 29.881073 kcal Electronic energy + Delta-G solvation = -13626.932971 eV Core-core repulsion = 11293.624081 eV Total energy + Delta-G solvation = -2333.308890 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.08932 -37.92186 -35.81468 -34.27961 -32.27042 -31.60581 -29.09091 -26.32219 -24.36666 -24.10807 -23.18915 -20.49603 -18.64985 -17.42420 -17.21588 -16.73682 -16.54422 -16.30652 -15.76430 -15.05984 -14.76442 -14.46858 -14.43550 -13.93355 -13.42666 -13.27745 -12.71394 -12.68318 -12.42334 -12.24067 -12.00617 -11.32859 -11.22639 -10.69937 -10.43330 -10.04114 -9.68519 -9.12000 -8.25365 -6.37284 -0.03082 0.22523 1.39773 1.41217 1.42716 1.55419 2.38739 2.91862 3.08130 3.57031 3.66197 3.74859 3.93830 4.04790 4.19239 4.25545 4.37227 4.55618 4.68753 4.83326 4.94758 4.98889 5.03633 5.21259 5.25963 5.50537 5.58562 5.73557 5.84756 5.97772 6.39011 6.68219 6.85900 7.03964 7.34180 8.86588 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.036951 B = 0.005747 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.588142 B = 4870.778346 C = 5219.704745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.686 5.686 11 C 0.066 3.934 12 C -0.113 4.113 13 C -0.129 4.129 14 C -0.020 4.020 15 C -0.166 4.166 16 C 0.086 3.914 17 N -0.518 5.518 18 C 0.082 3.918 19 C -0.176 4.176 20 H 0.266 0.734 21 H -0.036 1.036 22 H -0.006 1.006 23 H 0.337 0.663 24 H 0.031 0.969 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.182 0.818 30 H 0.167 0.833 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -15.487 2.433 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.317 5.317 11 C -0.062 4.062 12 C -0.132 4.132 13 C -0.148 4.148 14 C -0.028 4.028 15 C -0.185 4.185 16 C -0.070 4.070 17 N -0.228 5.228 18 C -0.074 4.074 19 C -0.196 4.196 20 H 0.074 0.926 21 H -0.019 1.019 22 H 0.012 0.988 23 H 0.155 0.845 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.159 0.841 27 H 0.176 0.824 28 H 0.181 0.819 29 H 0.199 0.801 30 H 0.184 0.816 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.290 -15.409 3.676 16.180 hybrid contribution 0.226 1.058 -1.535 1.878 sum 3.516 -14.351 2.142 14.930 Atomic orbital electron populations 1.70100 1.07906 1.28049 1.51453 1.25997 0.95814 1.03563 0.94461 0.85239 0.78953 0.78033 0.77793 1.18478 1.20090 1.20480 1.21576 0.93902 0.91325 1.50718 0.91548 1.19196 0.90628 0.88984 0.93057 1.60631 1.20481 1.01157 1.49399 1.21525 0.95655 0.88877 1.00190 1.23366 0.99008 0.93132 0.97708 1.21780 0.96816 1.01238 0.94928 1.19781 0.93825 0.94532 0.94666 1.22572 1.01675 1.01052 0.93240 1.23181 0.87350 0.95154 1.01363 1.67638 1.27105 1.12323 1.15686 1.22942 1.00073 0.95359 0.89016 1.22565 0.93463 1.01327 1.02203 0.92552 1.01886 0.98792 0.84516 0.95095 0.91219 0.84120 0.82406 0.81918 0.80136 0.81611 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.44 0.28 -56.92 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.98 44.50 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.05 9.32 25.60 0.24 -30.81 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 11.45 5.44 85.56 0.47 11.91 16 10 N -0.69 -29.81 6.48 -521.97 -3.38 -33.19 16 11 C 0.07 2.32 4.45 85.56 0.38 2.70 16 12 C -0.11 -2.95 9.74 24.53 0.24 -2.71 16 13 C -0.13 -2.93 9.84 23.64 0.23 -2.70 16 14 C -0.02 -0.52 5.19 -19.92 -0.10 -0.62 16 15 C -0.17 -3.77 9.89 22.62 0.22 -3.54 16 16 C 0.09 2.06 11.17 84.61 0.95 3.00 16 17 N -0.52 -15.08 10.35 -196.17 -2.03 -17.11 16 18 C 0.08 2.31 11.17 84.60 0.94 3.25 16 19 C -0.18 -4.90 7.42 22.62 0.17 -4.73 16 20 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 21 H -0.04 -2.12 8.14 -2.39 -0.02 -2.14 16 22 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 23 H 0.34 13.49 8.71 -89.69 -0.78 12.71 16 24 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 25 H 0.07 2.65 4.80 -2.39 -0.01 2.64 16 26 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 27 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 28 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.18 3.08 8.06 -2.91 -0.02 3.05 16 30 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 31 H 0.14 3.70 6.39 -2.91 -0.02 3.68 16 Total: -1.00 -68.98 270.65 1.44 -67.55 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.34 Total: 16.96 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.20 Total: -23.80 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -5.13 Total: -107.23 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.98 1.44 -67.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389347305.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.427 kcal (2) G-P(sol) polarization free energy of solvation -68.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds