Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50699 * 119.99867 * 2 1 4 4 O 1.42901 * 109.46738 * 135.00230 * 3 2 1 5 5 C 1.42902 * 114.00031 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47264 * 179.97438 * 5 4 3 7 7 C 1.38632 * 119.75213 * 269.72235 * 6 5 4 8 8 C 1.37614 * 120.25123 * 179.71891 * 7 6 5 9 9 C 1.40719 * 119.74124 * 0.57305 * 8 7 6 10 10 C 1.41395 * 120.24246 * 179.67718 * 9 8 7 11 11 H 1.07998 * 119.99970 * 155.30784 * 10 9 8 12 12 C 1.39951 * 120.00207 * 335.31835 * 10 9 8 13 13 N 1.30818 * 119.99753 * 342.22830 * 12 10 9 14 14 Si 1.86797 * 120.00021 * 162.22875 * 12 10 9 15 15 H 1.48500 * 109.47048 * 94.66426 * 14 12 10 16 16 H 1.48498 * 109.47252 * 214.66382 * 14 12 10 17 17 H 1.48496 * 109.47461 * 334.66371 * 14 12 10 18 18 C 1.40704 * 119.51466 * 359.70404 * 9 8 7 19 19 C 1.37620 * 119.74516 * 359.97438 * 18 9 8 20 20 H 1.08000 * 119.99618 * 179.97438 * 1 2 3 21 21 H 1.07999 * 120.00015 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00015 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47192 * 15.00511 * 3 2 1 24 24 H 1.08991 * 109.47537 * 255.00019 * 3 2 1 25 25 H 1.08998 * 109.47199 * 59.99761 * 5 4 3 26 26 H 1.09001 * 109.47096 * 299.99734 * 5 4 3 27 27 H 1.08005 * 119.87401 * 359.97438 * 7 6 5 28 28 H 1.07997 * 120.13194 * 180.28480 * 8 7 6 29 29 H 0.97004 * 119.99893 * 180.02562 * 13 12 10 30 30 H 1.08007 * 120.13445 * 179.97438 * 18 9 8 31 31 H 1.08000 * 119.87742 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 6 4.9934 2.2571 2.0629 7 6 4.7534 2.6064 3.3828 8 6 5.7354 2.4426 4.3329 9 6 6.9910 1.9297 3.9578 10 6 8.0099 1.7635 4.9240 11 1 8.7928 1.0371 4.7636 12 6 8.0037 2.5401 6.0882 13 7 7.2908 3.6357 6.1398 14 14 9.0134 2.0121 7.5685 15 1 10.3322 2.6940 7.5367 16 1 8.2952 2.3813 8.8147 17 1 9.2155 0.5415 7.5308 18 6 7.2252 1.5839 2.6142 19 6 6.2263 1.7500 1.6823 20 1 -0.5399 -0.9353 -0.0004 21 1 -0.5400 0.9353 0.0004 22 1 1.8501 -0.9353 -0.0004 23 1 1.3855 2.1161 0.2661 24 1 2.4755 1.4868 -0.9925 25 1 3.2679 3.2693 1.3206 26 1 4.3581 2.6408 0.0618 27 1 3.7907 3.0047 3.6674 28 1 5.5449 2.7111 5.3614 29 1 7.2867 4.1742 6.9466 30 1 8.1853 1.1898 2.3152 31 1 6.4036 1.4849 0.6504 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399211350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -32.098670 kcal Electronic energy + Delta-G solvation = -13587.126759 eV Core-core repulsion = 11218.837475 eV Total energy + Delta-G solvation = -2368.289284 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76940 -38.55597 -35.74598 -34.66680 -32.28168 -31.19105 -28.78970 -26.69700 -25.10194 -22.91940 -21.88321 -20.78087 -19.24958 -17.56440 -17.32469 -16.78257 -16.59328 -15.73779 -15.52661 -15.10947 -14.47787 -14.08780 -13.83313 -13.60634 -13.19469 -13.04975 -12.90805 -12.68768 -12.33748 -12.08369 -11.83403 -11.43393 -11.32079 -11.02132 -10.74076 -10.18748 -9.40341 -9.29186 -8.66787 -6.37138 0.84970 1.12388 1.28700 1.38239 1.48591 1.54687 2.20336 2.63146 3.18110 3.77109 4.08541 4.19816 4.27012 4.32938 4.47948 4.53774 4.60873 4.64472 4.66826 5.00661 5.02014 5.14044 5.33930 5.43332 5.67034 5.68089 5.75746 5.91492 6.07587 6.19996 6.35113 6.41650 6.66885 6.90954 7.00359 8.30807 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.057980 B = 0.005276 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.807528 B = 5305.656345 C = 5407.021086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.174 4.174 3 C 0.078 3.922 4 O -0.408 6.408 5 C 0.132 3.868 6 C -0.223 4.223 7 C -0.087 4.087 8 C -0.194 4.194 9 C 0.083 3.917 10 C -0.501 4.501 11 H 0.077 0.923 12 C 0.036 3.964 13 N -0.823 5.823 14 Si 0.984 3.016 15 H -0.260 1.260 16 H -0.265 1.265 17 H -0.259 1.259 18 C -0.247 4.247 19 C -0.073 4.073 20 H 0.119 0.881 21 H 0.109 0.891 22 H 0.108 0.892 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.290 0.710 30 H 0.100 0.900 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.081 -2.151 -6.875 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.003 3.997 4 O -0.329 6.329 5 C 0.057 3.943 6 C -0.224 4.224 7 C -0.106 4.106 8 C -0.214 4.214 9 C 0.081 3.919 10 C -0.530 4.530 11 H 0.095 0.905 12 C -0.180 4.180 13 N -0.448 5.448 14 Si 0.804 3.196 15 H -0.185 1.185 16 H -0.189 1.189 17 H -0.183 1.183 18 C -0.267 4.267 19 C -0.091 4.091 20 H 0.137 0.863 21 H 0.127 0.873 22 H 0.126 0.874 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.105 -2.092 -6.628 10.677 hybrid contribution 0.526 0.163 0.581 0.800 sum -7.579 -1.929 -6.048 9.886 Atomic orbital electron populations 1.24039 0.94851 1.03440 0.98215 1.22829 0.96435 0.97895 1.02026 1.21710 0.88924 0.96459 0.92648 1.88041 1.45155 1.38477 1.61193 1.21032 0.90374 0.86318 0.96594 1.19261 0.95623 1.12915 0.94568 1.20800 0.97608 0.99005 0.93170 1.21275 0.93681 1.07720 0.98702 1.18017 0.92597 0.89017 0.92259 1.19891 1.10006 1.19731 1.03343 0.90488 1.26805 0.96142 0.92851 1.02164 1.69875 1.34806 1.10554 1.29602 0.85168 0.78384 0.79842 0.76169 1.18502 1.18897 1.18303 1.21190 0.99279 1.12851 0.93364 1.20730 0.92977 0.97145 0.98280 0.86299 0.87310 0.87370 0.92062 0.91522 0.92771 0.92150 0.87692 0.88001 0.89981 0.88167 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 14.31 67.77 0.97 -2.12 16 2 C -0.17 -4.11 9.89 25.64 0.25 -3.86 16 3 C 0.08 2.04 6.35 71.24 0.45 2.50 16 4 O -0.41 -14.71 10.31 -148.98 -1.54 -16.24 16 5 C 0.13 4.71 6.05 71.24 0.43 5.14 16 6 C -0.22 -10.03 5.53 -19.67 -0.11 -10.14 16 7 C -0.09 -4.28 9.67 22.22 0.21 -4.06 16 8 C -0.19 -10.69 8.70 22.73 0.20 -10.49 16 9 C 0.08 4.69 5.57 -21.29 -0.12 4.58 16 10 C -0.50 -27.78 9.05 23.46 0.21 -27.57 16 11 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 12 C 0.04 1.83 5.14 85.26 0.44 2.27 16 13 N -0.82 -43.70 10.97 21.83 0.24 -43.46 16 14 Si 0.98 38.59 29.59 68.60 2.03 40.62 16 15 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 18 C -0.25 -12.69 9.80 22.73 0.22 -12.47 16 19 C -0.07 -3.37 9.67 22.22 0.21 -3.15 16 20 H 0.12 1.74 8.06 -2.91 -0.02 1.71 16 21 H 0.11 1.70 7.90 -2.91 -0.02 1.68 16 22 H 0.11 2.65 8.06 -2.91 -0.02 2.63 16 23 H 0.06 1.41 7.86 -2.39 -0.02 1.39 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 26 H 0.06 1.88 8.08 -2.39 -0.02 1.86 16 27 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 28 H 0.10 5.81 6.18 -2.91 -0.02 5.79 16 29 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 30 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -61.78 274.65 5.21 -56.57 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 1.09 Total: 21.91 kcal Atomic # 6 Polarization: -62.76 SS G_CDS: 3.38 Total: -59.38 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.24 Total: -43.46 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -1.54 Total: -16.24 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -61.78 5.21 -56.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399211350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.469 kcal (2) G-P(sol) polarization free energy of solvation -61.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds