Wall clock time and date at job start Mon Mar 30 2020 02:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31287 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48498 * 109.46994 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47013 * 300.00046 * 3 2 1 6 6 H 1.48495 * 109.47009 * 60.00190 * 3 2 1 7 7 C 1.38995 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37392 * 120.00362 * 359.97438 * 7 2 1 10 10 N 1.40100 * 126.11327 * 359.97364 * 9 7 2 11 11 C 1.30942 * 108.26163 * 180.02562 * 10 9 7 12 12 C 1.50697 * 125.79653 * 180.02562 * 11 10 9 13 13 C 1.53001 * 117.49749 * 163.59943 * 12 11 10 14 14 C 1.52998 * 117.50077 * 94.97499 * 12 11 10 15 15 C 1.40132 * 108.40364 * 359.76351 * 11 10 9 16 16 C 1.35246 * 107.98201 * 0.39113 * 15 11 10 17 17 C 1.50699 * 126.20399 * 179.87938 * 16 15 11 18 18 C 1.53000 * 117.50321 * 34.69079 * 17 16 15 19 19 C 1.52997 * 117.50247 * 326.06179 * 17 16 15 20 20 H 0.96991 * 119.99893 * 359.97438 * 1 2 3 21 21 H 1.08998 * 115.55138 * 309.30015 * 12 11 10 22 22 H 1.08998 * 117.49992 * 359.97438 * 13 12 11 23 23 H 1.08993 * 117.50058 * 145.01932 * 13 12 11 24 24 H 1.08998 * 117.49740 * 214.97479 * 14 12 11 25 25 H 1.08998 * 117.50109 * 359.97438 * 14 12 11 26 26 H 1.08001 * 126.01291 * 180.24762 * 15 11 10 27 27 H 1.09002 * 115.55636 * 180.37478 * 17 16 15 28 28 H 1.08990 * 117.49990 * 145.01584 * 18 17 16 29 29 H 1.09004 * 117.49237 * 359.97438 * 18 17 16 30 30 H 1.08999 * 117.49685 * 0.02562 * 19 17 16 31 31 H 1.08999 * 117.52022 * 214.97066 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3463 -0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8882 2.3964 1.2125 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2037 0.0001 9 7 1.3209 -2.3936 0.0016 10 7 -0.0721 -2.5429 0.0028 11 6 -0.3476 -3.8230 0.0041 12 6 -1.7280 -4.4275 0.0051 13 6 -1.8530 -5.9039 -0.3766 14 6 -2.3284 -4.8200 -1.3463 15 6 0.8591 -4.5353 -0.0016 16 6 1.8726 -3.6397 0.0023 17 6 3.3448 -3.9615 0.0010 18 6 3.7969 -5.1991 -0.7766 19 6 3.7946 -5.2155 0.7534 20 1 -0.4849 0.8400 0.0004 21 1 -2.4083 -4.0448 0.7659 22 1 -0.9368 -6.4377 -0.6289 23 1 -2.6155 -6.4927 0.1331 24 1 -3.4037 -4.6959 -1.4744 25 1 -1.7251 -4.6407 -2.2362 26 1 0.9619 -5.6104 -0.0059 27 1 4.0142 -3.1012 0.0112 28 1 4.7635 -5.1532 -1.2780 29 1 3.0292 -5.7809 -1.2870 30 1 3.0255 -5.8080 1.2489 31 1 4.7598 -5.1807 1.2584 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409441332.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:40 Heat of formation + Delta-G solvation = 122.495144 kcal Electronic energy + Delta-G solvation = -14326.541712 eV Core-core repulsion = 11997.248870 eV Total energy + Delta-G solvation = -2329.292842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.70102 -36.60832 -35.95279 -33.32880 -30.24833 -28.12488 -25.16728 -22.80024 -22.13400 -21.85640 -21.66729 -18.87710 -18.17349 -17.14869 -15.74477 -14.87800 -14.49478 -14.15584 -13.53056 -13.33501 -13.14673 -12.50323 -11.80527 -11.33166 -11.26440 -11.07609 -10.98240 -10.79213 -10.59309 -10.43256 -10.21125 -9.96758 -9.92693 -9.75054 -9.19202 -8.53357 -7.78134 -6.99736 -6.50831 -4.19224 2.96206 3.07585 3.12768 3.48311 3.85505 4.00648 4.50310 4.61616 4.74167 5.08691 5.29976 5.46474 5.55186 5.65514 5.70100 5.72665 6.05015 6.05617 6.10163 6.24793 6.32444 6.46918 6.60986 6.62102 6.67046 6.71407 6.92688 7.15395 7.25248 7.67263 7.97571 8.26256 8.74517 9.47035 9.75635 10.45717 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.021702 B = 0.011390 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.918672 B = 2457.627540 C = 3602.531494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.047 3.953 3 Si 0.930 3.070 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.115 0.885 9 N -0.145 5.145 10 N -0.251 5.251 11 C 0.001 3.999 12 C -0.044 4.044 13 C -0.177 4.177 14 C -0.176 4.176 15 C -0.288 4.288 16 C -0.001 4.001 17 C -0.059 4.059 18 C -0.176 4.176 19 C -0.176 4.176 20 H 0.272 0.728 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 -6.121 -0.513 6.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.170 4.170 3 Si 0.754 3.246 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.132 0.868 9 N 0.088 4.912 10 N -0.082 5.082 11 C -0.154 4.154 12 C -0.064 4.064 13 C -0.214 4.214 14 C -0.213 4.213 15 C -0.320 4.320 16 C -0.130 4.130 17 C -0.079 4.079 18 C -0.214 4.214 19 C -0.214 4.214 20 H 0.083 0.917 21 H 0.120 0.880 22 H 0.111 0.889 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.856 -4.725 -0.510 5.102 hybrid contribution 0.741 -0.010 0.004 0.741 sum 2.597 -4.735 -0.506 5.424 Atomic orbital electron populations 1.70221 1.06051 1.27599 1.36184 1.25597 0.95662 1.00105 0.95590 0.85829 0.79737 0.80569 0.78429 1.18718 1.19961 1.19950 1.19884 0.91657 0.80786 1.53209 0.86781 1.44754 1.03397 1.03289 1.39745 1.78174 0.89758 1.14261 1.25963 1.21005 0.92686 0.92508 1.09156 1.19809 0.93494 0.95169 0.97927 1.22875 1.02660 0.91748 1.04134 1.22878 0.99956 1.03846 0.94663 1.20125 0.90985 0.97360 1.23526 1.19671 0.92336 0.86017 1.14971 1.20041 0.92095 0.91817 1.03972 1.22946 1.02055 1.02330 0.94075 1.22947 1.02089 1.02061 0.94265 0.91721 0.88049 0.88875 0.89388 0.89444 0.89158 0.87075 0.87805 0.89392 0.88852 0.88797 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.91 11.82 55.50 0.66 -21.25 16 2 C 0.05 1.24 5.50 -17.50 -0.10 1.14 16 3 Si 0.93 19.43 29.55 -169.99 -5.02 14.41 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.32 -8.81 10.03 -14.78 -0.15 -8.96 16 8 H 0.11 2.83 6.85 -52.49 -0.36 2.47 16 9 N -0.14 -4.08 3.73 -7.83 -0.03 -4.11 16 10 N -0.25 -7.29 10.42 33.74 0.35 -6.94 16 11 C 0.00 0.02 6.86 -82.26 -0.56 -0.55 16 12 C -0.04 -0.91 6.33 -91.77 -0.58 -1.49 16 13 C -0.18 -2.90 10.02 -26.73 -0.27 -3.17 16 14 C -0.18 -3.10 10.23 -26.73 -0.27 -3.38 16 15 C -0.29 -6.86 9.13 -39.94 -0.36 -7.22 16 16 C 0.00 -0.02 6.61 -81.69 -0.54 -0.56 16 17 C -0.06 -1.19 6.02 -91.77 -0.55 -1.74 16 18 C -0.18 -2.87 10.05 -26.73 -0.27 -3.14 16 19 C -0.18 -2.86 10.05 -26.73 -0.27 -3.13 16 20 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 21 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 22 H 0.09 1.53 7.14 -51.93 -0.37 1.16 16 23 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 26 H 0.11 2.35 7.38 -52.49 -0.39 1.97 16 27 H 0.10 2.04 7.15 -51.93 -0.37 1.66 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.55 7.96 -51.93 -0.41 1.14 16 30 H 0.09 1.56 7.94 -51.93 -0.41 1.14 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 269.23 15.07 4.06 4.06 Total: -1.00 -31.06 269.23 -7.90 -38.95 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.99 Total: 7.07 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: -3.92 Total: -32.19 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.98 Total: -32.30 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.06 -7.90 -38.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441332.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.449 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds