Wall clock time and date at job start Mon Mar 30 2020 02:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31287 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48498 * 109.46994 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47013 * 300.00046 * 3 2 1 6 6 H 1.48495 * 109.47009 * 60.00190 * 3 2 1 7 7 C 1.38995 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37392 * 120.00362 * 359.97438 * 7 2 1 10 10 N 1.40100 * 126.11327 * 359.97364 * 9 7 2 11 11 C 1.30942 * 108.26163 * 180.02562 * 10 9 7 12 12 C 1.50697 * 125.79653 * 180.02562 * 11 10 9 13 13 C 1.53001 * 117.49749 * 163.59943 * 12 11 10 14 14 C 1.52998 * 117.50077 * 94.97499 * 12 11 10 15 15 C 1.40132 * 108.40364 * 359.76351 * 11 10 9 16 16 C 1.35246 * 107.98201 * 0.39113 * 15 11 10 17 17 C 1.50699 * 126.20399 * 179.87938 * 16 15 11 18 18 C 1.53000 * 117.50321 * 34.69079 * 17 16 15 19 19 C 1.52997 * 117.50247 * 326.06179 * 17 16 15 20 20 H 0.96991 * 119.99893 * 359.97438 * 1 2 3 21 21 H 1.08998 * 115.55138 * 309.30015 * 12 11 10 22 22 H 1.08998 * 117.49992 * 359.97438 * 13 12 11 23 23 H 1.08993 * 117.50058 * 145.01932 * 13 12 11 24 24 H 1.08998 * 117.49740 * 214.97479 * 14 12 11 25 25 H 1.08998 * 117.50109 * 359.97438 * 14 12 11 26 26 H 1.08001 * 126.01291 * 180.24762 * 15 11 10 27 27 H 1.09002 * 115.55636 * 180.37478 * 17 16 15 28 28 H 1.08990 * 117.49990 * 145.01584 * 18 17 16 29 29 H 1.09004 * 117.49237 * 359.97438 * 18 17 16 30 30 H 1.08999 * 117.49685 * 0.02562 * 19 17 16 31 31 H 1.08999 * 117.52022 * 214.97066 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3463 -0.0006 5 1 1.8881 2.3964 -1.2125 6 1 1.8882 2.3964 1.2125 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2037 0.0001 9 7 1.3209 -2.3936 0.0016 10 7 -0.0721 -2.5429 0.0028 11 6 -0.3476 -3.8230 0.0041 12 6 -1.7280 -4.4275 0.0051 13 6 -1.8530 -5.9039 -0.3766 14 6 -2.3284 -4.8200 -1.3463 15 6 0.8591 -4.5353 -0.0016 16 6 1.8726 -3.6397 0.0023 17 6 3.3448 -3.9615 0.0010 18 6 3.7969 -5.1991 -0.7766 19 6 3.7946 -5.2155 0.7534 20 1 -0.4849 0.8400 0.0004 21 1 -2.4083 -4.0448 0.7659 22 1 -0.9368 -6.4377 -0.6289 23 1 -2.6155 -6.4927 0.1331 24 1 -3.4037 -4.6959 -1.4744 25 1 -1.7251 -4.6407 -2.2362 26 1 0.9619 -5.6104 -0.0059 27 1 4.0142 -3.1012 0.0112 28 1 4.7635 -5.1532 -1.2780 29 1 3.0292 -5.7809 -1.2870 30 1 3.0255 -5.8080 1.2489 31 1 4.7598 -5.1807 1.2584 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409441332.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:40 Heat of formation + Delta-G solvation = 104.706730 kcal Electronic energy + Delta-G solvation = -14327.313076 eV Core-core repulsion = 11997.248870 eV Total energy + Delta-G solvation = -2330.064206 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.57708 -38.08028 -37.47197 -35.25225 -32.18721 -30.00358 -27.10327 -24.40717 -23.86809 -23.13883 -23.05860 -20.66242 -20.00090 -18.97016 -17.46658 -16.56672 -16.07677 -15.63169 -15.31066 -14.91619 -14.85468 -14.29891 -13.58954 -13.01645 -12.94978 -12.63786 -12.33935 -12.30519 -12.20348 -12.06130 -11.77098 -11.55877 -11.35569 -11.23339 -10.97531 -10.43070 -9.71795 -8.89943 -8.45361 -6.23626 1.26189 1.34849 1.52945 1.71833 2.10817 2.23054 2.75774 2.98396 3.16186 3.31842 3.81786 4.03643 4.08552 4.15522 4.24547 4.34945 4.47720 4.68348 4.80745 4.82091 4.83047 5.01776 5.06794 5.15694 5.18601 5.27152 5.34449 5.35272 5.43627 5.78924 6.06223 6.37125 6.81181 7.54248 7.79928 8.54618 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.021702 B = 0.011390 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.918672 B = 2457.627540 C = 3602.531494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.005 4.005 3 Si 1.012 2.988 4 H -0.245 1.245 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.358 4.358 8 H 0.127 0.873 9 N -0.181 5.181 10 N -0.310 5.310 11 C -0.004 4.004 12 C -0.088 4.088 13 C -0.139 4.139 14 C -0.169 4.169 15 C -0.298 4.298 16 C 0.001 3.999 17 C -0.104 4.104 18 C -0.152 4.152 19 C -0.151 4.151 20 H 0.273 0.727 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.124 0.876 24 H 0.114 0.886 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -7.800 -0.630 8.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.216 4.216 3 Si 0.831 3.169 4 H -0.168 1.168 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.144 0.856 9 N 0.051 4.949 10 N -0.140 5.140 11 C -0.160 4.160 12 C -0.108 4.108 13 C -0.176 4.176 14 C -0.206 4.206 15 C -0.329 4.329 16 C -0.129 4.129 17 C -0.124 4.124 18 C -0.190 4.190 19 C -0.189 4.189 20 H 0.083 0.917 21 H 0.117 0.883 22 H 0.113 0.887 23 H 0.143 0.857 24 H 0.132 0.868 25 H 0.091 0.909 26 H 0.156 0.844 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.163 -6.410 -0.627 7.175 hybrid contribution 0.330 0.319 0.036 0.460 sum 3.493 -6.091 -0.592 7.047 Atomic orbital electron populations 1.70396 1.08146 1.28581 1.38452 1.26764 0.96506 1.03943 0.94387 0.84644 0.78962 0.74914 0.78368 1.16818 1.19571 1.19544 1.20414 0.92506 0.81493 1.54450 0.85556 1.45011 1.03361 1.04527 1.41987 1.78040 0.91256 1.16728 1.27962 1.21820 0.95291 0.91838 1.07072 1.19961 0.91741 0.98837 1.00224 1.22996 1.03379 0.89540 1.01693 1.22930 1.01104 1.03929 0.92681 1.20480 0.90363 0.98551 1.23530 1.20615 0.95027 0.85213 1.12037 1.20182 0.89319 0.93682 1.09238 1.23047 1.03031 0.98465 0.94429 1.23049 1.03070 0.98173 0.94618 0.91688 0.88310 0.88662 0.85739 0.86762 0.90880 0.84407 0.88168 0.86382 0.89131 0.89074 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.30 11.82 21.66 0.26 -49.05 16 2 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 3 Si 1.01 40.82 29.55 68.60 2.03 42.85 16 4 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.36 -20.27 10.03 84.00 0.84 -19.42 16 8 H 0.13 6.46 6.85 -2.91 -0.02 6.44 16 9 N -0.18 -10.63 3.73 -178.70 -0.67 -11.29 16 10 N -0.31 -18.88 10.42 -47.17 -0.49 -19.37 16 11 C 0.00 -0.22 6.86 43.15 0.30 0.08 16 12 C -0.09 -3.60 6.33 -11.54 -0.07 -3.67 16 13 C -0.14 -4.18 10.02 30.60 0.31 -3.88 16 14 C -0.17 -5.74 10.23 30.59 0.31 -5.43 16 15 C -0.30 -14.20 9.13 22.04 0.20 -14.00 16 16 C 0.00 0.05 6.61 41.18 0.27 0.32 16 17 C -0.10 -4.05 6.02 -11.54 -0.07 -4.12 16 18 C -0.15 -4.48 10.05 30.60 0.31 -4.18 16 19 C -0.15 -4.46 10.05 30.60 0.31 -4.16 16 20 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 21 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 22 H 0.09 2.85 7.14 -2.39 -0.02 2.83 16 23 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 24 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.14 5.62 7.38 -2.91 -0.02 5.59 16 27 H 0.10 3.90 7.15 -2.39 -0.02 3.88 16 28 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.09 2.74 7.96 -2.38 -0.02 2.72 16 30 H 0.09 2.75 7.94 -2.39 -0.02 2.74 16 31 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -72.01 269.23 5.42 -66.59 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 1.12 Total: 28.56 kcal Atomic # 6 Polarization: -61.46 SS G_CDS: 3.17 Total: -58.29 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -0.90 Total: -79.71 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -72.01 5.42 -66.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441332.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.299 kcal (2) G-P(sol) polarization free energy of solvation -72.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds