Wall clock time and date at job start Mon Mar 30 2020 02:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99876 * 2 1 4 4 C 1.38753 * 120.05596 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94463 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05902 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.10681 * 359.96109 * 6 5 4 8 8 C 1.38160 * 120.05764 * 359.75940 * 7 6 5 9 9 C 1.50697 * 120.03040 * 180.25475 * 8 7 6 10 10 C 1.50702 * 109.47039 * 265.28158 * 9 8 7 11 11 C 1.35042 * 119.99786 * 125.00235 * 10 9 8 12 12 C 1.40067 * 119.99713 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00550 * 0.02562 * 12 11 10 14 14 C 1.40312 * 119.99812 * 179.97438 * 12 11 10 15 15 N 1.30694 * 119.99929 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00178 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47311 * 89.99731 * 16 14 12 18 18 H 1.48499 * 109.47381 * 210.00090 * 16 14 12 19 19 H 1.48498 * 109.46990 * 329.99866 * 16 14 12 20 20 H 1.09001 * 109.47103 * 60.00723 * 1 2 3 21 21 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47187 * 300.00283 * 1 2 3 23 23 H 1.08004 * 120.02740 * 0.02562 * 4 3 2 24 24 H 1.08006 * 119.97321 * 179.97438 * 5 4 3 25 25 H 1.07995 * 119.95054 * 179.97438 * 6 5 4 26 26 H 1.08001 * 119.96998 * 180.02562 * 7 6 5 27 27 H 1.08995 * 109.47030 * 25.28343 * 9 8 7 28 28 H 1.09007 * 109.47333 * 145.28381 * 9 8 7 29 29 H 1.07997 * 120.00539 * 304.99508 * 10 9 8 30 30 H 1.07997 * 119.99737 * 0.02562 * 11 10 9 31 31 H 0.97003 * 119.99866 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5171 -0.0008 8 6 3.4311 1.2849 0.0056 9 6 4.2537 0.0222 0.0123 10 6 4.4301 -0.4698 -1.4012 11 6 5.6698 -0.6883 -1.8903 12 6 5.8337 -1.1461 -3.2038 13 1 4.9688 -1.3241 -3.8256 14 6 7.1217 -1.3726 -3.7122 15 7 8.1684 -1.1568 -2.9599 16 14 7.3405 -1.9825 -5.4642 17 1 7.4519 -0.8209 -6.3825 18 1 8.5750 -2.8032 -5.5522 19 1 6.1685 -2.8084 -5.8507 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2128 2.3203 -0.0005 24 1 1.3339 4.5114 -0.0019 25 1 3.7921 4.6381 -0.0024 26 1 5.1344 2.5753 -0.0008 27 1 5.2305 0.2273 0.4502 28 1 3.7442 -0.7403 0.6015 29 1 3.5653 -0.6479 -2.0230 30 1 6.5346 -0.5107 -1.2683 31 1 9.0589 -1.3130 -3.3115 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687680696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:05 Heat of formation + Delta-G solvation = -20.393343 kcal Electronic energy + Delta-G solvation = -13770.442338 eV Core-core repulsion = 11402.660634 eV Total energy + Delta-G solvation = -2367.781703 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.74094 -36.97874 -34.40804 -32.90441 -30.32266 -29.66970 -27.30836 -26.55942 -23.60348 -21.67391 -20.89181 -18.36335 -17.49358 -16.79877 -15.76804 -15.38558 -15.15341 -14.75732 -14.02807 -13.40686 -13.09952 -12.80010 -12.49472 -12.00739 -11.69431 -11.65340 -11.26120 -10.98707 -10.82824 -10.76945 -10.43421 -10.20179 -9.68013 -9.44097 -9.27190 -8.31891 -7.64446 -7.49792 -6.65956 -4.14535 1.80886 1.91224 3.01317 3.13507 3.19332 3.69089 3.97025 4.05079 4.27496 5.11292 5.22151 5.30249 5.33878 5.48543 5.55148 5.62516 5.79830 5.96970 6.11735 6.43097 6.49297 6.77957 6.83708 6.92467 7.14454 7.24392 7.28411 7.37169 7.40097 7.86458 8.13329 8.51754 8.78954 9.17498 9.38332 10.37877 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035508 B = 0.006283 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.373359 B = 4455.422537 C = 4804.169005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.305 6.305 3 C 0.120 3.880 4 C -0.212 4.212 5 C -0.107 4.107 6 C -0.157 4.157 7 C -0.086 4.086 8 C -0.073 4.073 9 C 0.000 4.000 10 C -0.405 4.405 11 C 0.051 3.949 12 C -0.461 4.461 13 H 0.067 0.933 14 C 0.072 3.928 15 N -0.826 5.826 16 Si 0.910 3.090 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.263 1.263 20 H 0.050 0.950 21 H 0.095 0.905 22 H 0.048 0.952 23 H 0.119 0.881 24 H 0.115 0.885 25 H 0.116 0.884 26 H 0.126 0.874 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 5.678 4.803 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.075 3.925 4 C -0.231 4.231 5 C -0.125 4.125 6 C -0.175 4.175 7 C -0.104 4.104 8 C -0.074 4.074 9 C -0.037 4.037 10 C -0.427 4.427 11 C 0.031 3.969 12 C -0.492 4.492 13 H 0.085 0.915 14 C -0.144 4.144 15 N -0.453 5.453 16 Si 0.736 3.264 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.187 1.187 20 H 0.069 0.931 21 H 0.113 0.887 22 H 0.067 0.933 23 H 0.137 0.863 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.144 0.856 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.425 5.460 4.801 11.904 hybrid contribution -0.134 -0.025 -0.953 0.963 sum -9.559 5.434 3.848 11.650 Atomic orbital electron populations 1.22965 0.79740 1.03359 1.00615 1.86184 1.20059 1.26894 1.88672 1.18887 0.92056 0.83832 0.97762 1.21099 0.99286 0.92643 1.10050 1.20711 0.94624 0.96434 1.00725 1.20970 0.93855 0.98120 1.04538 1.20926 0.99979 0.91062 0.98411 1.19840 0.90652 0.97305 0.99617 1.18981 0.95932 0.90926 0.97843 1.21817 0.96093 1.28671 0.96099 1.19925 0.93881 0.89234 0.93842 1.19563 0.91889 1.38889 0.98882 0.91485 1.26085 0.95950 0.92865 0.99459 1.69569 0.99380 1.38869 1.37491 0.86285 0.78469 0.79386 0.82310 1.19532 1.20344 1.18660 0.93144 0.88700 0.93345 0.86321 0.86732 0.86603 0.85622 0.93101 0.93662 0.90905 0.90338 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.56 9.63 -19.43 -0.19 -5.75 16 3 C 0.12 2.24 6.66 -39.22 -0.26 1.98 16 4 C -0.21 -3.34 9.04 -39.44 -0.36 -3.70 16 5 C -0.11 -1.58 10.04 -39.61 -0.40 -1.98 16 6 C -0.16 -2.46 10.04 -39.56 -0.40 -2.86 16 7 C -0.09 -1.57 9.68 -39.60 -0.38 -1.95 16 8 C -0.07 -1.50 5.13 -104.48 -0.54 -2.03 16 9 C 0.00 0.01 5.52 -29.03 -0.16 -0.15 16 10 C -0.40 -10.67 9.26 -35.44 -0.33 -11.00 16 11 C 0.05 1.45 9.00 -40.03 -0.36 1.09 16 12 C -0.46 -13.23 9.05 -38.12 -0.35 -13.58 16 13 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 14 C 0.07 1.93 5.50 -17.26 -0.09 1.84 16 15 N -0.83 -22.68 12.86 55.57 0.71 -21.96 16 16 Si 0.91 19.96 29.56 -169.99 -5.03 14.93 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 21 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 22 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 23 H 0.12 1.53 6.30 -52.48 -0.33 1.20 16 24 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 27 H 0.05 1.11 7.76 -51.93 -0.40 0.71 16 28 H 0.05 1.00 7.69 -51.93 -0.40 0.60 16 29 H 0.07 2.02 8.05 -52.49 -0.42 1.60 16 30 H 0.08 2.28 7.27 -52.49 -0.38 1.90 16 31 H 0.28 6.95 8.29 -40.82 -0.34 6.61 16 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -30.13 272.97 -6.98 -37.11 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -3.97 Total: 2.55 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -2.63 Total: -31.00 kcal Atomic # 7 Polarization: -22.68 SS G_CDS: 0.71 Total: -21.96 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.19 Total: -5.75 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.13 -6.98 -37.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687680696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.721 kcal (2) G-P(sol) polarization free energy of solvation -30.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds