Wall clock time and date at job start Mon Mar 30 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35902 * 116.99876 * 2 1 4 4 C 1.38753 * 120.05596 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94463 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05902 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.10681 * 359.96109 * 6 5 4 8 8 C 1.38160 * 120.05764 * 359.75940 * 7 6 5 9 9 C 1.50697 * 120.03040 * 180.25475 * 8 7 6 10 10 C 1.50702 * 109.47039 * 265.28158 * 9 8 7 11 11 C 1.35042 * 119.99786 * 125.00235 * 10 9 8 12 12 C 1.40067 * 119.99713 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00550 * 0.02562 * 12 11 10 14 14 C 1.40312 * 119.99812 * 179.97438 * 12 11 10 15 15 N 1.30694 * 119.99929 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00178 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47311 * 89.99731 * 16 14 12 18 18 H 1.48499 * 109.47381 * 210.00090 * 16 14 12 19 19 H 1.48498 * 109.46990 * 329.99866 * 16 14 12 20 20 H 1.09001 * 109.47103 * 60.00723 * 1 2 3 21 21 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47187 * 300.00283 * 1 2 3 23 23 H 1.08004 * 120.02740 * 0.02562 * 4 3 2 24 24 H 1.08006 * 119.97321 * 179.97438 * 5 4 3 25 25 H 1.07995 * 119.95054 * 179.97438 * 6 5 4 26 26 H 1.08001 * 119.96998 * 180.02562 * 7 6 5 27 27 H 1.08995 * 109.47030 * 25.28343 * 9 8 7 28 28 H 1.09007 * 109.47333 * 145.28381 * 9 8 7 29 29 H 1.07997 * 120.00539 * 304.99508 * 10 9 8 30 30 H 1.07997 * 119.99737 * 0.02562 * 11 10 9 31 31 H 0.97003 * 119.99866 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5171 -0.0008 8 6 3.4311 1.2849 0.0056 9 6 4.2537 0.0222 0.0123 10 6 4.4301 -0.4698 -1.4012 11 6 5.6698 -0.6883 -1.8903 12 6 5.8337 -1.1461 -3.2038 13 1 4.9688 -1.3241 -3.8256 14 6 7.1217 -1.3726 -3.7122 15 7 8.1684 -1.1568 -2.9599 16 14 7.3405 -1.9825 -5.4642 17 1 7.4519 -0.8209 -6.3825 18 1 8.5750 -2.8032 -5.5522 19 1 6.1685 -2.8084 -5.8507 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2128 2.3203 -0.0005 24 1 1.3339 4.5114 -0.0019 25 1 3.7921 4.6381 -0.0024 26 1 5.1344 2.5753 -0.0008 27 1 5.2305 0.2273 0.4502 28 1 3.7442 -0.7403 0.6015 29 1 3.5653 -0.6479 -2.0230 30 1 6.5346 -0.5107 -1.2683 31 1 9.0589 -1.3130 -3.3115 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687680696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:04 Heat of formation + Delta-G solvation = -37.343411 kcal Electronic energy + Delta-G solvation = -13771.177348 eV Core-core repulsion = 11402.660634 eV Total energy + Delta-G solvation = -2368.516713 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03861 -38.26525 -36.44000 -34.70332 -32.11667 -30.94991 -28.82274 -27.92151 -25.49837 -22.94446 -22.36921 -20.36871 -19.02636 -18.73568 -17.09602 -16.77332 -16.50429 -16.37468 -15.27206 -15.05362 -14.66551 -14.45682 -13.97196 -13.55874 -13.39060 -13.05320 -12.81164 -12.50947 -12.42017 -12.14424 -11.92733 -11.86433 -11.48684 -11.47155 -11.38282 -9.74189 -9.62953 -8.95959 -8.69212 -6.32043 0.49150 0.60252 1.24390 1.35013 1.50157 1.95908 2.21072 2.53010 2.93567 3.36844 3.98017 4.00136 4.26433 4.34683 4.41432 4.49489 4.60582 4.71122 4.72310 4.82364 4.98133 5.10664 5.17019 5.22939 5.38410 5.48968 5.60043 5.75744 5.91783 6.03083 6.34979 6.60361 6.62915 7.00354 7.20487 8.35899 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035508 B = 0.006283 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.373359 B = 4455.422537 C = 4804.169005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.105 3.895 4 C -0.210 4.210 5 C -0.095 4.095 6 C -0.157 4.157 7 C -0.101 4.101 8 C -0.116 4.116 9 C 0.007 3.993 10 C -0.392 4.392 11 C 0.026 3.974 12 C -0.502 4.502 13 H 0.059 0.941 14 C 0.028 3.972 15 N -0.855 5.855 16 Si 0.990 3.010 17 H -0.259 1.259 18 H -0.261 1.261 19 H -0.261 1.261 20 H 0.060 0.940 21 H 0.111 0.889 22 H 0.070 0.930 23 H 0.152 0.848 24 H 0.157 0.843 25 H 0.147 0.853 26 H 0.120 0.880 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.128 7.009 4.088 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.060 3.940 4 C -0.228 4.228 5 C -0.113 4.113 6 C -0.175 4.175 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.030 4.030 10 C -0.414 4.414 11 C 0.006 3.994 12 C -0.532 4.532 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.483 5.483 16 Si 0.809 3.191 17 H -0.183 1.183 18 H -0.185 1.185 19 H -0.185 1.185 20 H 0.079 0.921 21 H 0.129 0.871 22 H 0.089 0.911 23 H 0.169 0.831 24 H 0.175 0.825 25 H 0.164 0.836 26 H 0.138 0.862 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.787 6.798 4.113 13.398 hybrid contribution 0.179 -0.379 -0.631 0.757 sum -10.608 6.419 3.483 12.879 Atomic orbital electron populations 1.23301 0.76962 1.05126 1.02136 1.86126 1.23099 1.27333 1.88771 1.19074 0.91755 0.85140 0.98059 1.21487 1.00857 0.91825 1.08639 1.21252 0.94500 0.97661 0.97839 1.21323 0.94565 0.98237 1.03397 1.21051 1.00175 0.91657 0.99057 1.19708 0.91741 0.96592 1.03604 1.18796 0.96398 0.92595 0.95194 1.21930 0.94561 1.27220 0.97686 1.19963 0.93931 0.91115 0.94379 1.19751 0.92982 1.41176 0.99271 0.92229 1.27031 0.94794 0.92275 1.04391 1.69614 1.00226 1.38763 1.39690 0.85106 0.78915 0.79152 0.75878 1.18338 1.18464 1.18520 0.92090 0.87069 0.91118 0.83084 0.82498 0.83573 0.86228 0.93548 0.93926 0.92770 0.91878 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.34 -12.35 9.63 -92.44 -0.89 -13.24 16 3 C 0.10 3.87 6.66 22.51 0.15 4.02 16 4 C -0.21 -6.00 9.04 22.36 0.20 -5.80 16 5 C -0.09 -2.44 10.04 22.25 0.22 -2.22 16 6 C -0.16 -4.56 10.04 22.28 0.22 -4.34 16 7 C -0.10 -3.73 9.68 22.25 0.22 -3.52 16 8 C -0.12 -4.83 5.13 -19.77 -0.10 -4.93 16 9 C 0.01 0.35 5.52 29.10 0.16 0.51 16 10 C -0.39 -21.80 9.26 24.95 0.23 -21.57 16 11 C 0.03 1.56 9.00 21.98 0.20 1.76 16 12 C -0.50 -29.88 9.05 23.22 0.21 -29.67 16 13 H 0.06 3.52 7.85 -2.91 -0.02 3.50 16 14 C 0.03 1.52 5.50 85.37 0.47 1.99 16 15 N -0.86 -47.74 12.86 21.89 0.28 -47.46 16 16 Si 0.99 40.82 29.56 68.60 2.03 42.85 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H 0.06 1.26 7.66 -2.39 -0.02 1.25 16 21 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 22 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 23 H 0.15 3.25 6.30 -2.91 -0.02 3.23 16 24 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 25 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 26 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 27 H 0.05 2.16 7.76 -2.39 -0.02 2.14 16 28 H 0.04 1.99 7.69 -2.38 -0.02 1.97 16 29 H 0.05 3.17 8.05 -2.91 -0.02 3.15 16 30 H 0.06 3.90 7.27 -2.91 -0.02 3.88 16 31 H 0.29 14.50 8.29 -92.71 -0.77 13.73 16 Total: -1.00 -67.94 272.97 5.82 -62.13 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.10 Total: 17.93 kcal Atomic # 6 Polarization: -65.50 SS G_CDS: 3.30 Total: -62.20 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.28 Total: -47.46 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.89 Total: -13.24 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -67.94 5.82 -62.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687680696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.782 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds