Wall clock time and date at job start Mon Mar 30 2020 02:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35905 * 117.00240 * 2 1 4 4 C 1.38755 * 120.05189 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94425 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05481 * 359.97267 * 5 4 3 7 7 C 1.38247 * 120.11155 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.97001 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47359 * 90.00353 * 8 7 6 10 10 C 1.35031 * 120.00260 * 124.99420 * 9 8 7 11 11 C 1.40073 * 120.00238 * 180.02562 * 10 9 8 12 12 H 1.08007 * 119.99627 * 0.02562 * 11 10 9 13 13 C 1.40308 * 120.00399 * 180.02562 * 11 10 9 14 14 N 1.30693 * 119.99697 * 359.97438 * 13 11 10 15 15 Si 1.86790 * 120.00327 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47344 * 59.99870 * 15 13 11 17 17 H 1.48500 * 109.47311 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47114 * 299.99734 * 15 13 11 19 19 C 1.38165 * 120.05172 * 359.74987 * 7 6 5 20 20 H 1.08996 * 109.47672 * 59.99762 * 1 2 3 21 21 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47220 * 299.99819 * 1 2 3 23 23 H 1.08000 * 120.03110 * 359.95190 * 4 3 2 24 24 H 1.08000 * 119.97761 * 179.97438 * 5 4 3 25 25 H 1.08001 * 119.94121 * 180.02562 * 6 5 4 26 26 H 1.09003 * 109.47272 * 210.00007 * 8 7 6 27 27 H 1.09002 * 109.47295 * 330.00398 * 8 7 6 28 28 H 1.08007 * 119.99605 * 304.99937 * 9 8 7 29 29 H 1.07997 * 119.99724 * 0.02562 * 10 9 8 30 30 H 0.96995 * 119.99996 * 180.02562 * 14 13 11 31 31 H 1.08001 * 120.02453 * 180.24915 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 4.0559 2.5171 0.0011 8 6 5.5607 2.5982 0.0024 9 6 6.0613 2.6239 1.4235 10 6 6.9686 1.7131 1.8363 11 6 7.4335 1.7366 3.1575 12 1 7.0659 2.4830 3.8461 13 6 8.3768 0.7905 3.5863 14 7 8.8213 -0.1130 2.7531 15 14 8.9962 0.8215 5.3482 16 1 7.8533 0.6355 6.2781 17 1 9.9786 -0.2742 5.5469 18 1 9.6486 2.1274 5.6207 19 6 3.4310 1.2849 0.0053 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2127 2.3204 0.0002 24 1 1.3339 4.5114 0.0011 25 1 3.7921 4.6381 0.0025 26 1 5.9718 1.7296 -0.5120 27 1 5.8760 3.5070 -0.5103 28 1 5.6941 3.3708 2.1119 29 1 7.3359 0.9665 1.1478 30 1 9.4730 -0.7673 3.0496 31 1 4.0205 0.3800 0.0090 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687680697.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:06 Heat of formation + Delta-G solvation = -39.130116 kcal Electronic energy + Delta-G solvation = -13538.105813 eV Core-core repulsion = 11169.511622 eV Total energy + Delta-G solvation = -2368.594191 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00306 -38.61195 -36.36755 -34.52272 -32.07994 -31.27146 -28.71667 -27.95378 -25.46593 -23.38273 -22.09671 -20.38109 -19.04738 -18.47948 -17.13898 -16.87426 -16.69615 -16.59170 -15.32636 -14.84807 -14.66633 -14.51692 -14.09026 -13.52668 -13.36297 -13.05511 -12.88316 -12.56709 -12.37395 -12.33204 -11.95028 -11.77427 -11.50168 -11.44099 -11.41106 -9.77307 -9.60130 -9.08586 -8.70841 -6.33896 0.47270 0.56019 1.26002 1.35329 1.48791 1.95371 2.20526 2.42190 2.89847 3.36098 3.93841 4.03549 4.29224 4.33716 4.41537 4.45783 4.53904 4.64401 4.72605 4.79577 5.03940 5.09254 5.14307 5.22077 5.30839 5.40035 5.54569 5.81351 5.88726 5.99363 6.33931 6.53536 6.60013 6.99645 7.18152 8.34713 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.035031 B = 0.005730 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.109130 B = 4885.448087 C = 5250.860808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.117 3.883 4 C -0.221 4.221 5 C -0.075 4.075 6 C -0.171 4.171 7 C -0.030 4.030 8 C -0.005 4.005 9 C -0.403 4.403 10 C 0.028 3.972 11 C -0.501 4.501 12 H 0.064 0.936 13 C 0.027 3.973 14 N -0.856 5.856 15 Si 0.990 3.010 16 H -0.261 1.261 17 H -0.263 1.263 18 H -0.257 1.257 19 C -0.180 4.180 20 H 0.069 0.931 21 H 0.117 0.883 22 H 0.064 0.936 23 H 0.156 0.844 24 H 0.158 0.842 25 H 0.131 0.869 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.291 0.709 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.817 2.564 -3.784 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.259 6.259 3 C 0.072 3.928 4 C -0.239 4.239 5 C -0.092 4.092 6 C -0.189 4.189 7 C -0.030 4.030 8 C -0.043 4.043 9 C -0.424 4.424 10 C 0.008 3.992 11 C -0.531 4.531 12 H 0.082 0.918 13 C -0.186 4.186 14 N -0.483 5.483 15 Si 0.810 3.190 16 H -0.185 1.185 17 H -0.187 1.187 18 H -0.181 1.181 19 C -0.199 4.199 20 H 0.088 0.912 21 H 0.135 0.865 22 H 0.082 0.918 23 H 0.174 0.826 24 H 0.176 0.824 25 H 0.149 0.851 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.579 2.149 -3.827 14.271 hybrid contribution 0.417 -0.226 0.626 0.786 sum -13.162 1.923 -3.201 13.682 Atomic orbital electron populations 1.23349 0.76320 1.05478 1.02403 1.86044 1.23750 1.27166 1.88893 1.19100 0.91772 0.85206 0.96715 1.21435 1.00980 0.91561 1.09969 1.21268 0.93885 0.98117 0.95961 1.21171 0.94612 0.97823 1.05295 1.20050 0.96474 0.92640 0.93861 1.19075 0.89638 1.00139 0.95401 1.21987 1.14313 1.09454 0.96695 1.19980 0.91806 0.92782 0.94668 1.19776 1.22000 1.13566 0.97782 0.91778 1.27064 0.94313 0.92790 1.04445 1.69614 1.25604 1.14109 1.38981 0.85140 0.78652 0.79379 0.75807 1.18511 1.18675 1.18088 1.20331 0.92330 0.98108 1.09116 0.91202 0.86482 0.91774 0.82614 0.82435 0.85069 0.93752 0.91937 0.91678 0.92222 0.89833 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -10.77 10.50 -92.48 -0.97 -11.74 16 3 C 0.12 4.00 6.69 22.50 0.15 4.15 16 4 C -0.22 -6.05 9.04 22.37 0.20 -5.85 16 5 C -0.07 -2.02 10.04 22.25 0.22 -1.79 16 6 C -0.17 -5.69 9.70 22.28 0.22 -5.48 16 7 C -0.03 -1.21 5.11 -19.88 -0.10 -1.31 16 8 C -0.01 -0.24 5.80 29.10 0.17 -0.07 16 9 C -0.40 -21.36 9.26 24.95 0.23 -21.13 16 10 C 0.03 1.63 9.00 21.98 0.20 1.82 16 11 C -0.50 -29.34 9.05 23.22 0.21 -29.13 16 12 H 0.06 3.68 7.85 -2.91 -0.02 3.65 16 13 C 0.03 1.45 5.50 85.37 0.47 1.92 16 14 N -0.86 -47.76 12.86 21.89 0.28 -47.48 16 15 Si 0.99 40.47 29.56 68.60 2.03 42.49 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 19 C -0.18 -7.30 9.64 22.36 0.22 -7.08 16 20 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 21 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 22 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 23 H 0.16 3.04 6.30 -2.91 -0.02 3.02 16 24 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 25 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 26 H 0.04 2.01 7.79 -2.39 -0.02 1.99 16 27 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16 28 H 0.06 3.53 8.05 -2.91 -0.02 3.51 16 29 H 0.06 3.67 7.27 -2.91 -0.02 3.65 16 30 H 0.29 14.57 8.29 -92.71 -0.77 13.80 16 31 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -66.10 274.16 5.74 -60.37 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.10 Total: 18.85 kcal Atomic # 6 Polarization: -65.79 SS G_CDS: 3.30 Total: -62.49 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.28 Total: -47.48 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.97 Total: -11.74 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.49 kcal Total: -66.10 5.74 -60.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687680697.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.237 kcal (2) G-P(sol) polarization free energy of solvation -66.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds