Wall clock time and date at job start Mon Mar 30 2020 02:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.34041 * 2 1 4 4 C 1.51364 * 110.30321 * 237.86905 * 2 1 3 5 5 C 1.38498 * 130.39334 * 43.93776 * 4 2 1 6 6 C 1.38099 * 120.21501 * 180.02562 * 5 4 2 7 7 C 1.38254 * 119.93924 * 359.90603 * 6 5 4 8 8 C 1.38105 * 119.92994 * 0.03157 * 7 6 5 9 9 C 1.38212 * 109.75877 * 223.88572 * 4 2 1 10 10 C 1.51371 * 109.76128 * 0.02562 * 9 4 2 11 11 C 1.54348 * 105.16773 * 17.18916 * 10 9 4 12 12 O 1.42897 * 110.99373 * 91.95571 * 11 10 9 13 13 C 1.50700 * 110.82146 * 215.42615 * 11 10 9 14 14 H 1.08004 * 119.99540 * 118.18342 * 13 11 10 15 15 C 1.37879 * 120.00119 * 298.18945 * 13 11 10 16 16 N 1.31513 * 119.99839 * 197.97298 * 15 13 11 17 17 Si 1.86797 * 120.00100 * 17.96710 * 15 13 11 18 18 H 1.48495 * 109.46933 * 180.02562 * 17 15 13 19 19 H 1.48495 * 109.47260 * 300.00376 * 17 15 13 20 20 H 1.48504 * 109.47136 * 60.00217 * 17 15 13 21 21 H 1.09001 * 109.47333 * 297.87195 * 1 2 3 22 22 H 1.08992 * 109.47313 * 57.87790 * 1 2 3 23 23 H 1.09006 * 109.46975 * 177.87625 * 1 2 3 24 24 H 1.07998 * 119.89417 * 359.92422 * 5 4 2 25 25 H 1.08003 * 120.03165 * 179.97438 * 6 5 4 26 26 H 1.07996 * 120.03707 * 180.02562 * 7 6 5 27 27 H 1.08004 * 119.88849 * 180.02562 * 8 7 6 28 28 H 1.09000 * 110.30421 * 258.26395 * 10 9 4 29 29 H 1.09005 * 110.30478 * 136.10721 * 10 9 4 30 30 H 0.96698 * 114.00181 * 70.00485 * 12 11 10 31 31 H 0.97004 * 119.99720 * 355.27715 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0553 -0.7550 -1.2022 5 6 1.6543 -0.7231 -2.5275 6 6 2.2904 -1.5124 -3.4652 7 6 3.3323 -2.3362 -3.0812 8 6 3.7343 -2.3684 -1.7604 9 6 3.0966 -1.5787 -0.8182 10 6 3.3421 -1.4340 0.6684 11 6 2.0650 -0.7705 1.2260 12 8 1.1236 -1.7548 1.6584 13 6 2.4000 0.1767 2.3492 14 1 2.1740 1.2285 2.2541 15 6 2.9953 -0.2994 3.4981 16 7 2.9702 0.4204 4.5985 17 14 3.8370 -1.9670 3.4919 18 1 4.3931 -2.2457 4.8403 19 1 2.8502 -3.0183 3.1369 20 1 4.9365 -1.9628 2.4936 21 1 -0.3634 0.4804 0.9084 22 1 -0.3633 0.5464 -0.8703 23 1 -0.3633 -1.0270 -0.0381 24 1 0.8405 -0.0800 -2.8282 25 1 1.9751 -1.4855 -4.4978 26 1 3.8311 -2.9538 -3.8133 27 1 4.5486 -3.0119 -1.4613 28 1 4.2085 -0.7976 0.8486 29 1 3.4896 -2.4131 1.1245 30 1 1.3928 -2.2337 2.4542 31 1 2.5940 1.3144 4.5847 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699340665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:41 Heat of formation + Delta-G solvation = -26.294878 kcal Electronic energy + Delta-G solvation = -14914.661160 eV Core-core repulsion = 12546.623547 eV Total energy + Delta-G solvation = -2368.037613 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80925 -36.71519 -33.24268 -32.47152 -31.60261 -29.06718 -28.05736 -24.72571 -23.75540 -21.09259 -20.68246 -19.16807 -17.74526 -16.13396 -15.26657 -15.05134 -14.51488 -13.82239 -13.71129 -13.30057 -13.06508 -12.47440 -12.44389 -12.15769 -11.88033 -11.52504 -11.13243 -10.79360 -10.62573 -10.46387 -10.04761 -9.98943 -9.66342 -9.19853 -8.90408 -8.38553 -8.23226 -7.97701 -6.63478 -4.32039 1.80640 1.82512 3.16283 3.27925 3.45050 4.20412 4.26727 4.92547 5.12892 5.25216 5.32661 5.40754 5.51205 5.79659 5.91172 5.94243 6.00151 6.22366 6.27260 6.40560 6.48937 6.53957 6.70910 6.80825 6.81644 6.90887 7.00572 7.24046 7.28538 7.45390 7.83217 8.18898 8.69565 8.92582 9.40741 10.73136 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.037779 B = 0.011500 C = 0.009660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.976472 B = 2434.143269 C = 2897.821099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.033 4.033 3 H 0.087 0.913 4 C -0.080 4.080 5 C -0.112 4.112 6 C -0.133 4.133 7 C -0.130 4.130 8 C -0.118 4.118 9 C -0.079 4.079 10 C -0.126 4.126 11 C 0.233 3.767 12 O -0.577 6.577 13 C -0.616 4.616 14 H 0.065 0.935 15 C 0.032 3.968 16 N -0.891 5.891 17 Si 1.047 2.953 18 H -0.286 1.286 19 H -0.281 1.281 20 H -0.276 1.276 21 H 0.058 0.942 22 H 0.035 0.965 23 H 0.058 0.942 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.361 0.639 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 -4.325 -11.304 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.051 4.051 3 H 0.105 0.895 4 C -0.080 4.080 5 C -0.130 4.130 6 C -0.151 4.151 7 C -0.148 4.148 8 C -0.136 4.136 9 C -0.079 4.079 10 C -0.163 4.163 11 C 0.193 3.807 12 O -0.385 6.385 13 C -0.653 4.653 14 H 0.083 0.917 15 C -0.175 4.175 16 N -0.524 5.524 17 Si 0.877 3.123 18 H -0.213 1.213 19 H -0.209 1.209 20 H -0.202 1.202 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.132 0.868 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.210 0.790 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.490 -5.175 -10.842 12.023 hybrid contribution -0.326 0.916 -0.591 1.138 sum 0.164 -4.259 -11.433 12.201 Atomic orbital electron populations 1.21445 0.94606 1.01708 1.00135 1.20661 0.96062 0.98159 0.90190 0.89511 1.20899 0.95825 0.97014 0.94216 1.20578 1.00219 1.00031 0.92142 1.20885 0.97397 0.98026 0.98757 1.20883 0.98225 1.00126 0.95601 1.20638 1.00319 0.99880 0.92749 1.20858 0.95375 0.95361 0.96352 1.22503 1.02894 1.00736 0.90189 1.19526 0.83479 0.85857 0.91813 1.86377 1.49492 1.54798 1.47837 1.22326 1.44934 0.95925 1.02152 0.91696 1.25808 0.94918 1.05174 0.91580 1.70820 1.43342 1.11744 1.26476 0.84172 0.77436 0.74846 0.75872 1.21297 1.20876 1.20224 0.92300 0.94612 0.92284 0.86800 0.86634 0.86633 0.86833 0.89061 0.92099 0.79034 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.39 8.46 37.16 0.31 -2.08 16 2 C -0.03 -0.70 2.97 -90.73 -0.27 -0.97 16 3 H 0.09 1.89 7.79 -51.93 -0.40 1.48 16 4 C -0.08 -1.57 5.60 -104.21 -0.58 -2.15 16 5 C -0.11 -1.87 9.79 -39.54 -0.39 -2.26 16 6 C -0.13 -1.97 10.05 -39.63 -0.40 -2.37 16 7 C -0.13 -1.95 10.05 -39.62 -0.40 -2.34 16 8 C -0.12 -2.02 10.04 -39.53 -0.40 -2.41 16 9 C -0.08 -1.60 6.14 -104.21 -0.64 -2.24 16 10 C -0.13 -2.78 3.84 -26.85 -0.10 -2.88 16 11 C 0.23 5.56 0.73 -90.35 -0.07 5.50 16 12 O -0.58 -13.93 11.61 -35.23 -0.41 -14.33 16 13 C -0.62 -16.73 8.57 -34.44 -0.30 -17.03 16 14 H 0.06 1.89 7.90 -52.48 -0.41 1.48 16 15 C 0.03 0.89 5.35 -17.82 -0.10 0.79 16 16 N -0.89 -26.25 13.70 55.43 0.76 -25.49 16 17 Si 1.05 23.97 23.45 -169.99 -3.99 19.98 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -5.89 5.78 56.52 0.33 -5.57 16 20 H -0.28 -5.92 6.24 56.52 0.35 -5.57 16 21 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 22 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 23 H 0.06 1.19 7.48 -51.93 -0.39 0.80 16 24 H 0.11 1.67 7.99 -52.49 -0.42 1.25 16 25 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 26 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 27 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 28 H 0.09 2.06 7.20 -51.93 -0.37 1.69 16 29 H 0.06 1.30 5.44 -51.93 -0.28 1.02 16 30 H 0.36 8.35 5.67 45.56 0.26 8.60 16 31 H 0.27 8.00 8.73 -40.82 -0.36 7.64 16 LS Contribution 248.05 15.07 3.74 3.74 Total: -1.00 -29.23 248.05 -6.63 -35.86 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -3.41 Total: 10.68 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -3.32 Total: -30.43 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.76 Total: -25.49 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.41 Total: -14.33 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -3.99 Total: 19.98 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.23 -6.63 -35.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699340665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.566 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds