Wall clock time and date at job start Mon Mar 30 2020 02:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.34041 * 2 1 4 4 C 1.51364 * 110.30321 * 237.86905 * 2 1 3 5 5 C 1.38498 * 130.39334 * 43.93776 * 4 2 1 6 6 C 1.38099 * 120.21501 * 180.02562 * 5 4 2 7 7 C 1.38254 * 119.93924 * 359.90603 * 6 5 4 8 8 C 1.38105 * 119.92994 * 0.03157 * 7 6 5 9 9 C 1.38212 * 109.75877 * 223.88572 * 4 2 1 10 10 C 1.51371 * 109.76128 * 0.02562 * 9 4 2 11 11 C 1.54348 * 105.16773 * 17.18916 * 10 9 4 12 12 O 1.42897 * 110.99373 * 91.95571 * 11 10 9 13 13 C 1.50700 * 110.82146 * 215.42615 * 11 10 9 14 14 H 1.08004 * 119.99540 * 118.18342 * 13 11 10 15 15 C 1.37879 * 120.00119 * 298.18945 * 13 11 10 16 16 N 1.31513 * 119.99839 * 197.97298 * 15 13 11 17 17 Si 1.86797 * 120.00100 * 17.96710 * 15 13 11 18 18 H 1.48495 * 109.46933 * 180.02562 * 17 15 13 19 19 H 1.48495 * 109.47260 * 300.00376 * 17 15 13 20 20 H 1.48504 * 109.47136 * 60.00217 * 17 15 13 21 21 H 1.09001 * 109.47333 * 297.87195 * 1 2 3 22 22 H 1.08992 * 109.47313 * 57.87790 * 1 2 3 23 23 H 1.09006 * 109.46975 * 177.87625 * 1 2 3 24 24 H 1.07998 * 119.89417 * 359.92422 * 5 4 2 25 25 H 1.08003 * 120.03165 * 179.97438 * 6 5 4 26 26 H 1.07996 * 120.03707 * 180.02562 * 7 6 5 27 27 H 1.08004 * 119.88849 * 180.02562 * 8 7 6 28 28 H 1.09000 * 110.30421 * 258.26395 * 10 9 4 29 29 H 1.09005 * 110.30478 * 136.10721 * 10 9 4 30 30 H 0.96698 * 114.00181 * 70.00485 * 12 11 10 31 31 H 0.97004 * 119.99720 * 355.27715 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9089 1.0220 0.0000 4 6 2.0553 -0.7550 -1.2022 5 6 1.6543 -0.7231 -2.5275 6 6 2.2904 -1.5124 -3.4652 7 6 3.3323 -2.3362 -3.0812 8 6 3.7343 -2.3684 -1.7604 9 6 3.0966 -1.5787 -0.8182 10 6 3.3421 -1.4340 0.6684 11 6 2.0650 -0.7705 1.2260 12 8 1.1236 -1.7548 1.6584 13 6 2.4000 0.1767 2.3492 14 1 2.1740 1.2285 2.2541 15 6 2.9953 -0.2994 3.4981 16 7 2.9702 0.4204 4.5985 17 14 3.8370 -1.9670 3.4919 18 1 4.3931 -2.2457 4.8403 19 1 2.8502 -3.0183 3.1369 20 1 4.9365 -1.9628 2.4936 21 1 -0.3634 0.4804 0.9084 22 1 -0.3633 0.5464 -0.8703 23 1 -0.3633 -1.0270 -0.0381 24 1 0.8405 -0.0800 -2.8282 25 1 1.9751 -1.4855 -4.4978 26 1 3.8311 -2.9538 -3.8133 27 1 4.5486 -3.0119 -1.4613 28 1 4.2085 -0.7976 0.8486 29 1 3.4896 -2.4131 1.1245 30 1 1.3928 -2.2337 2.4542 31 1 2.5940 1.3144 4.5847 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699340665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:41 Heat of formation + Delta-G solvation = -45.911259 kcal Electronic energy + Delta-G solvation = -14915.511791 eV Core-core repulsion = 12546.623547 eV Total energy + Delta-G solvation = -2368.888243 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30561 -38.33046 -34.90490 -34.61042 -33.06811 -30.45925 -29.75465 -26.54010 -25.35182 -22.64739 -22.11985 -20.81795 -19.82807 -17.68371 -16.88334 -16.64127 -15.98656 -15.46734 -15.34934 -14.95830 -14.60243 -14.27917 -14.01460 -13.82780 -13.37085 -12.97703 -12.83226 -12.43390 -12.26160 -12.10920 -11.75997 -11.56297 -11.43538 -11.03272 -10.90672 -10.27567 -9.65218 -9.36617 -8.86163 -6.56398 0.52546 0.53884 1.32585 1.43673 1.62733 2.34140 2.88097 2.93552 3.57033 3.67093 3.78866 4.14671 4.23757 4.28019 4.34073 4.55365 4.62496 4.71890 4.74217 4.79665 4.94114 5.09357 5.17438 5.21453 5.34175 5.50733 5.59942 5.64299 5.84413 5.87587 5.91447 6.19173 6.41162 7.02790 7.26017 8.48842 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.037779 B = 0.011500 C = 0.009660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.976472 B = 2434.143269 C = 2897.821099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.038 4.038 3 H 0.068 0.932 4 C -0.102 4.102 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.121 4.121 8 C -0.123 4.123 9 C -0.110 4.110 10 C -0.121 4.121 11 C 0.225 3.775 12 O -0.580 6.580 13 C -0.622 4.622 14 H 0.025 0.975 15 C -0.013 4.013 16 N -0.922 5.922 17 Si 1.082 2.918 18 H -0.291 1.291 19 H -0.249 1.249 20 H -0.252 1.252 21 H 0.036 0.964 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.133 0.867 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.132 0.868 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.363 0.637 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -6.637 -14.612 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.056 4.056 3 H 0.086 0.914 4 C -0.102 4.102 5 C -0.134 4.134 6 C -0.140 4.140 7 C -0.139 4.139 8 C -0.141 4.141 9 C -0.110 4.110 10 C -0.159 4.159 11 C 0.185 3.815 12 O -0.388 6.388 13 C -0.660 4.660 14 H 0.043 0.957 15 C -0.213 4.213 16 N -0.557 5.557 17 Si 0.904 3.096 18 H -0.218 1.218 19 H -0.174 1.174 20 H -0.177 1.177 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.072 0.928 24 H 0.151 0.849 25 H 0.174 0.826 26 H 0.173 0.827 27 H 0.150 0.850 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.212 0.788 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.880 -7.473 -14.175 16.049 hybrid contribution -0.495 1.725 0.341 1.827 sum 0.385 -5.748 -13.834 14.986 Atomic orbital electron populations 1.21358 0.93557 1.01540 1.00525 1.20562 0.97066 0.97256 0.90732 0.91397 1.20773 0.96814 0.97797 0.94835 1.20871 1.00877 1.00634 0.91063 1.21383 0.96247 0.96167 1.00171 1.21373 0.97628 0.99602 0.95250 1.20933 1.00521 0.99377 0.93246 1.20787 0.97068 0.97715 0.95417 1.22221 1.00772 1.00367 0.92516 1.19519 0.84839 0.85673 0.91477 1.86363 1.49845 1.54650 1.47956 1.22508 1.44521 0.94933 1.04001 0.95705 1.27243 0.94732 1.08397 0.90937 1.70957 1.45348 1.11556 1.27843 0.83786 0.77974 0.71551 0.76292 1.21813 1.17426 1.17661 0.94504 0.91375 0.92775 0.84929 0.82641 0.82659 0.84961 0.90621 0.91356 0.78782 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 8.46 71.98 0.61 -3.81 16 2 C -0.04 -1.65 2.97 -10.86 -0.03 -1.68 16 3 H 0.07 3.11 7.79 -2.39 -0.02 3.09 16 4 C -0.10 -3.87 5.60 -19.60 -0.11 -3.98 16 5 C -0.12 -3.49 9.79 22.30 0.22 -3.28 16 6 C -0.12 -2.95 10.05 22.24 0.22 -2.73 16 7 C -0.12 -2.94 10.05 22.24 0.22 -2.72 16 8 C -0.12 -3.74 10.04 22.30 0.22 -3.52 16 9 C -0.11 -4.21 6.14 -19.60 -0.12 -4.33 16 10 C -0.12 -5.28 3.84 30.52 0.12 -5.17 16 11 C 0.22 10.90 0.73 -10.62 -0.01 10.89 16 12 O -0.58 -27.97 11.61 -148.98 -1.73 -29.70 16 13 C -0.62 -35.46 8.57 25.60 0.22 -35.24 16 14 H 0.02 1.56 7.90 -2.91 -0.02 1.53 16 15 C -0.01 -0.73 5.35 84.66 0.45 -0.28 16 16 N -0.92 -56.82 13.70 21.45 0.29 -56.53 16 17 Si 1.08 48.17 23.45 68.60 1.61 49.78 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.25 -9.72 5.78 99.48 0.57 -9.15 16 20 H -0.25 -10.21 6.24 99.48 0.62 -9.59 16 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.07 2.17 8.07 -2.39 -0.02 2.16 16 23 H 0.05 2.15 7.48 -2.38 -0.02 2.13 16 24 H 0.13 3.38 7.99 -2.91 -0.02 3.36 16 25 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 26 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 27 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 28 H 0.08 3.43 7.20 -2.39 -0.02 3.42 16 29 H 0.07 2.79 5.44 -2.38 -0.01 2.78 16 30 H 0.36 16.60 5.67 -74.06 -0.42 16.18 16 31 H 0.26 16.06 8.73 -92.71 -0.81 15.25 16 Total: -1.00 -66.21 248.05 2.64 -63.57 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.45 Total: 28.74 kcal Atomic # 6 Polarization: -57.87 SS G_CDS: 2.02 Total: -55.85 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.29 Total: -56.53 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -1.73 Total: -29.70 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.61 Total: 49.78 kcal Total: -66.21 2.64 -63.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699340665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.654 kcal (2) G-P(sol) polarization free energy of solvation -66.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds