Wall clock time and date at job start Mon Mar 30 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29993 * 121.42173 * 2 1 4 4 C 1.45482 * 123.79464 * 182.12707 * 3 2 1 5 5 C 1.52954 * 113.28992 * 325.88705 * 4 3 2 6 6 C 1.50770 * 108.55635 * 44.53517 * 5 4 3 7 7 C 1.37960 * 120.29543 * 331.00306 * 6 5 4 8 8 C 1.44788 * 106.68653 * 179.40182 * 7 6 5 9 9 C 1.35147 * 106.02249 * 359.85026 * 8 7 6 10 10 N 1.33438 * 131.51903 * 149.90742 * 6 5 4 11 11 C 1.46500 * 124.92718 * 0.97555 * 10 6 5 12 12 C 1.50706 * 109.47299 * 84.71905 * 11 10 6 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 H 1.08996 * 109.47119 * 269.97702 * 1 2 3 21 21 H 1.08997 * 109.46770 * 29.98246 * 1 2 3 22 22 H 1.08999 * 109.47196 * 149.97325 * 1 2 3 23 23 H 1.09001 * 108.72722 * 86.87272 * 4 3 2 24 24 H 1.09004 * 108.72100 * 204.90782 * 4 3 2 25 25 H 1.08996 * 109.64503 * 164.42259 * 5 4 3 26 26 H 1.09003 * 109.64212 * 285.04565 * 5 4 3 27 27 H 1.08007 * 126.99042 * 179.86673 * 8 7 6 28 28 H 1.08004 * 125.51856 * 179.97438 * 9 8 7 29 29 H 1.09004 * 109.47078 * 324.72666 * 11 10 6 30 30 H 1.08993 * 109.47364 * 204.72438 * 11 10 6 31 31 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1847 1.1093 0.0000 4 6 3.6376 1.1700 -0.0449 5 6 4.3143 0.0180 0.6998 6 6 3.6096 -1.2655 0.3402 7 6 2.2728 -1.2536 -0.0005 8 6 1.9080 -2.6224 -0.3001 9 6 3.0307 -3.3543 -0.1262 10 7 4.0492 -2.5226 0.2574 11 6 5.4207 -2.9521 0.5416 12 6 5.5772 -3.1864 2.0221 13 1 4.7387 -3.0314 2.6848 14 6 6.7906 -3.5987 2.5304 15 7 7.8102 -3.7926 1.7227 16 14 6.9843 -3.8898 4.3654 17 1 8.3729 -4.3308 4.6528 18 1 6.7033 -2.6295 5.0989 19 1 6.0306 -4.9405 4.8032 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3633 -0.8897 -0.5142 23 1 3.9568 1.1483 -1.0869 24 1 3.9623 2.1115 0.3982 25 1 5.3623 -0.0425 0.4065 26 1 4.2405 0.1831 1.7748 27 1 0.9362 -2.9848 -0.6016 28 1 3.1118 -4.4220 -0.2669 29 1 6.1177 -2.1779 0.2207 30 1 5.6311 -3.8761 0.0032 31 1 7.7096 -3.6417 0.7698 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821281915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:28 Heat of formation + Delta-G solvation = 45.984531 kcal Electronic energy + Delta-G solvation = -14355.399307 eV Core-core repulsion = 12022.788715 eV Total energy + Delta-G solvation = -2332.610592 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.80466 -36.83756 -33.92580 -32.54754 -30.75808 -28.92737 -27.00082 -26.37910 -23.22538 -22.70030 -20.93395 -19.12280 -17.35008 -16.75355 -16.33610 -14.95057 -14.46346 -13.92355 -13.80863 -13.36329 -13.26466 -13.03261 -12.64571 -12.24095 -11.89647 -11.78043 -11.67953 -11.43304 -11.21247 -10.83804 -10.71991 -10.25761 -9.73709 -9.10571 -8.71968 -8.69929 -7.79408 -7.21455 -6.71401 -4.49285 2.04398 3.05362 3.29260 3.29703 3.48933 3.72589 3.82896 4.29949 4.62573 5.02380 5.15252 5.21936 5.42878 5.55355 5.70489 5.81959 5.83939 5.92791 5.97184 6.07100 6.18772 6.30083 6.35047 6.36272 6.50671 6.69026 7.05831 7.47332 7.54195 7.89104 7.97189 8.21997 8.42726 8.44911 9.21532 10.65203 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.037795 B = 0.007972 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.660084 B = 3511.300974 C = 3709.059327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.262 3.738 3 N -0.571 5.571 4 C 0.064 3.936 5 C -0.073 4.073 6 C 0.067 3.933 7 C -0.253 4.253 8 C -0.168 4.168 9 C -0.023 4.023 10 N -0.387 5.387 11 C 0.215 3.785 12 C -0.621 4.621 13 H 0.060 0.940 14 C 0.027 3.973 15 N -0.899 5.899 16 Si 1.074 2.926 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.248 4.185 -3.060 10.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.076 3.924 3 N -0.282 5.282 4 C -0.066 4.066 5 C -0.112 4.112 6 C -0.058 4.058 7 C -0.263 4.263 8 C -0.193 4.193 9 C -0.152 4.152 10 N -0.055 5.055 11 C 0.096 3.904 12 C -0.659 4.659 13 H 0.078 0.922 14 C -0.179 4.179 15 N -0.533 5.533 16 Si 0.901 3.099 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.095 0.905 21 H 0.090 0.910 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.154 0.846 28 H 0.174 0.826 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.796 4.556 -1.837 9.214 hybrid contribution -0.450 -0.568 -1.136 1.348 sum -8.246 3.988 -2.973 9.630 Atomic orbital electron populations 1.20581 0.89109 1.02791 1.02786 1.22449 0.94931 0.86760 0.88244 1.71067 1.08727 1.29155 1.19292 1.21776 0.87734 0.97343 0.99789 1.20529 0.99435 0.89718 1.01481 1.20274 0.94143 0.87108 1.04245 1.20060 0.93864 0.94289 1.18090 1.21322 0.97546 0.91461 1.08993 1.21885 0.87675 0.96269 1.09412 1.43710 1.11140 1.05216 1.45466 1.19897 0.75636 0.96162 0.98745 1.22149 1.00492 1.52209 0.91037 0.92164 1.25943 0.91504 0.92984 1.07427 1.70853 1.32355 1.44511 1.05612 0.83453 0.76481 0.76915 0.73094 1.20325 1.21063 1.21046 0.90497 0.90955 0.90724 0.91780 0.89668 0.90087 0.90141 0.84569 0.82552 0.94660 0.94269 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.29 36.01 0.37 -0.84 16 2 C 0.26 4.55 7.06 -79.86 -0.56 3.98 16 3 N -0.57 -10.29 10.66 -55.67 -0.59 -10.89 16 4 C 0.06 1.09 6.96 -4.61 -0.03 1.05 16 5 C -0.07 -1.39 6.32 -27.87 -0.18 -1.56 16 6 C 0.07 1.42 6.74 -81.96 -0.55 0.87 16 7 C -0.25 -4.94 6.18 -103.91 -0.64 -5.59 16 8 C -0.17 -3.04 10.98 -38.10 -0.42 -3.46 16 9 C -0.02 -0.45 11.37 -16.36 -0.19 -0.64 16 10 N -0.39 -8.67 2.65 -113.40 -0.30 -8.97 16 11 C 0.21 5.28 4.96 -5.19 -0.03 5.25 16 12 C -0.62 -16.87 9.38 -34.44 -0.32 -17.19 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.03 0.74 5.46 -17.82 -0.10 0.64 16 15 N -0.90 -25.66 13.65 55.43 0.76 -24.91 16 16 Si 1.07 24.21 29.90 -169.99 -5.08 19.13 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.08 1.52 7.67 -51.93 -0.40 1.12 16 26 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 27 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 28 H 0.16 2.74 8.06 -52.48 -0.42 2.32 16 29 H 0.04 0.89 7.52 -51.93 -0.39 0.50 16 30 H 0.04 0.97 7.98 -51.93 -0.41 0.56 16 31 H 0.27 7.52 7.22 -40.82 -0.29 7.23 16 LS Contribution 266.93 15.07 4.02 4.02 Total: -1.00 -30.03 266.93 -7.92 -37.96 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.08 Total: 1.12 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -2.65 Total: -17.48 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.14 Total: -44.76 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.08 Total: 19.13 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.03 -7.92 -37.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821281915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.942 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds