Wall clock time and date at job start Mon Mar 30 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29993 * 121.42173 * 2 1 4 4 C 1.45482 * 123.79464 * 182.12707 * 3 2 1 5 5 C 1.52954 * 113.28992 * 325.88705 * 4 3 2 6 6 C 1.50770 * 108.55635 * 44.53517 * 5 4 3 7 7 C 1.37960 * 120.29543 * 331.00306 * 6 5 4 8 8 C 1.44788 * 106.68653 * 179.40182 * 7 6 5 9 9 C 1.35147 * 106.02249 * 359.85026 * 8 7 6 10 10 N 1.33438 * 131.51903 * 149.90742 * 6 5 4 11 11 C 1.46500 * 124.92718 * 0.97555 * 10 6 5 12 12 C 1.50706 * 109.47299 * 84.71905 * 11 10 6 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47364 * 179.72558 * 16 14 12 18 18 H 1.48508 * 109.46883 * 299.72681 * 16 14 12 19 19 H 1.48497 * 109.46870 * 59.72491 * 16 14 12 20 20 H 1.08996 * 109.47119 * 269.97702 * 1 2 3 21 21 H 1.08997 * 109.46770 * 29.98246 * 1 2 3 22 22 H 1.08999 * 109.47196 * 149.97325 * 1 2 3 23 23 H 1.09001 * 108.72722 * 86.87272 * 4 3 2 24 24 H 1.09004 * 108.72100 * 204.90782 * 4 3 2 25 25 H 1.08996 * 109.64503 * 164.42259 * 5 4 3 26 26 H 1.09003 * 109.64212 * 285.04565 * 5 4 3 27 27 H 1.08007 * 126.99042 * 179.86673 * 8 7 6 28 28 H 1.08004 * 125.51856 * 179.97438 * 9 8 7 29 29 H 1.09004 * 109.47078 * 324.72666 * 11 10 6 30 30 H 1.08993 * 109.47364 * 204.72438 * 11 10 6 31 31 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1847 1.1093 0.0000 4 6 3.6376 1.1700 -0.0449 5 6 4.3143 0.0180 0.6998 6 6 3.6096 -1.2655 0.3402 7 6 2.2728 -1.2536 -0.0005 8 6 1.9080 -2.6224 -0.3001 9 6 3.0307 -3.3543 -0.1262 10 7 4.0492 -2.5226 0.2574 11 6 5.4207 -2.9521 0.5416 12 6 5.5772 -3.1864 2.0221 13 1 4.7387 -3.0314 2.6848 14 6 6.7906 -3.5987 2.5304 15 7 7.8102 -3.7926 1.7227 16 14 6.9843 -3.8898 4.3654 17 1 8.3729 -4.3308 4.6528 18 1 6.7033 -2.6295 5.0989 19 1 6.0306 -4.9405 4.8032 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3633 -0.8897 -0.5142 23 1 3.9568 1.1483 -1.0869 24 1 3.9623 2.1115 0.3982 25 1 5.3623 -0.0425 0.4065 26 1 4.2405 0.1831 1.7748 27 1 0.9362 -2.9848 -0.6016 28 1 3.1118 -4.4220 -0.2669 29 1 6.1177 -2.1779 0.2207 30 1 5.6311 -3.8761 0.0032 31 1 7.7096 -3.6417 0.7698 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821281915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:28 Heat of formation + Delta-G solvation = 27.931482 kcal Electronic energy + Delta-G solvation = -14356.182146 eV Core-core repulsion = 12022.788715 eV Total energy + Delta-G solvation = -2333.393431 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.36200 -38.26388 -35.91265 -33.99365 -32.44436 -30.29917 -28.48570 -28.07679 -25.20563 -24.12551 -22.42518 -20.71457 -19.29595 -18.22273 -17.96255 -16.47334 -16.07624 -15.76729 -15.33235 -14.94118 -14.75459 -14.17403 -14.15864 -13.95034 -13.57642 -13.28994 -13.09726 -12.93902 -12.74809 -12.61244 -12.18242 -12.00936 -11.36237 -10.82427 -10.78659 -10.11479 -9.40075 -8.90866 -8.73100 -6.68992 0.61285 1.44809 1.51552 1.52809 1.73452 2.12443 2.35942 2.42355 2.91685 3.35419 3.65102 3.82925 4.02632 4.09361 4.21439 4.35614 4.38340 4.47851 4.63840 4.74040 4.82527 4.89013 4.98607 5.01727 5.12373 5.17051 5.47092 5.73454 5.81193 6.01433 6.22484 6.38991 6.47426 7.07432 7.09914 8.47617 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.037795 B = 0.007972 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.660084 B = 3511.300974 C = 3709.059327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.257 3.743 3 N -0.582 5.582 4 C 0.066 3.934 5 C -0.070 4.070 6 C 0.027 3.973 7 C -0.256 4.256 8 C -0.151 4.151 9 C -0.047 4.047 10 N -0.406 5.406 11 C 0.227 3.773 12 C -0.630 4.630 13 H 0.045 0.955 14 C -0.015 4.015 15 N -0.919 5.919 16 Si 1.117 2.883 17 H -0.275 1.275 18 H -0.272 1.272 19 H -0.269 1.269 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.179 0.821 28 H 0.172 0.828 29 H 0.022 0.978 30 H 0.032 0.968 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 4.377 -2.765 12.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 N -0.294 5.294 4 C -0.064 4.064 5 C -0.110 4.110 6 C -0.096 4.096 7 C -0.266 4.266 8 C -0.175 4.175 9 C -0.175 4.175 10 N -0.076 5.076 11 C 0.106 3.894 12 C -0.668 4.668 13 H 0.064 0.936 14 C -0.215 4.215 15 N -0.554 5.554 16 Si 0.937 3.063 17 H -0.200 1.200 18 H -0.198 1.198 19 H -0.194 1.194 20 H 0.108 0.892 21 H 0.104 0.896 22 H 0.113 0.887 23 H 0.085 0.915 24 H 0.123 0.877 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.196 0.804 28 H 0.190 0.810 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.791 4.759 -1.566 10.999 hybrid contribution 0.101 -0.608 -1.288 1.428 sum -9.691 4.151 -2.854 10.922 Atomic orbital electron populations 1.20715 0.85534 1.04534 1.04099 1.23153 0.97005 0.85419 0.87349 1.71129 1.08862 1.29474 1.19912 1.21827 0.87625 0.97155 0.99802 1.20543 0.99230 0.90186 1.00990 1.20799 0.95646 0.87251 1.05880 1.20567 0.93321 0.95916 1.16782 1.21801 0.98492 0.90357 1.06879 1.22418 0.87789 0.97259 1.10052 1.43659 1.10581 1.06185 1.47140 1.19509 0.77324 0.95246 0.97301 1.22328 1.00131 1.52122 0.92220 0.93635 1.27310 0.91165 0.92123 1.10941 1.70954 1.33027 1.45989 1.05447 0.82922 0.76908 0.77753 0.68704 1.19967 1.19770 1.19420 0.89191 0.89560 0.88681 0.91479 0.87708 0.90939 0.91328 0.80423 0.81035 0.96046 0.94994 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 10.29 71.24 0.73 -1.25 16 2 C 0.26 8.29 7.06 45.10 0.32 8.61 16 3 N -0.58 -19.96 10.66 -330.04 -3.52 -23.48 16 4 C 0.07 2.20 6.96 86.56 0.60 2.81 16 5 C -0.07 -2.74 6.32 29.85 0.19 -2.55 16 6 C 0.03 1.15 6.74 42.27 0.28 1.43 16 7 C -0.26 -9.58 6.18 -19.40 -0.12 -9.70 16 8 C -0.15 -5.07 10.98 23.23 0.26 -4.81 16 9 C -0.05 -1.82 11.37 83.18 0.95 -0.88 16 10 N -0.41 -18.40 2.65 -512.70 -1.36 -19.76 16 11 C 0.23 11.50 4.96 85.64 0.42 11.93 16 12 C -0.63 -34.91 9.38 25.60 0.24 -34.67 16 13 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 14 C -0.01 -0.82 5.46 84.65 0.46 -0.36 16 15 N -0.92 -53.26 13.65 21.45 0.29 -52.96 16 16 Si 1.12 48.39 29.90 68.60 2.05 50.44 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.09 1.67 8.01 -2.39 -0.02 1.65 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 25 H 0.07 2.85 7.67 -2.39 -0.02 2.84 16 26 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 27 H 0.18 4.36 8.06 -2.91 -0.02 4.33 16 28 H 0.17 5.87 8.06 -2.91 -0.02 5.85 16 29 H 0.02 1.14 7.52 -2.39 -0.02 1.12 16 30 H 0.03 1.65 7.98 -2.39 -0.02 1.63 16 31 H 0.26 15.02 7.22 -92.71 -0.67 14.35 16 Total: -1.00 -64.30 266.93 3.01 -61.29 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.21 Total: 13.91 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 4.34 Total: -29.43 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -4.59 Total: -96.21 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.05 Total: 50.44 kcal Total: -64.30 3.01 -61.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821281915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.221 kcal (2) G-P(sol) polarization free energy of solvation -64.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds