Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.47117 * 2 1 4 4 N 1.30041 * 121.42128 * 359.97438 * 3 2 1 5 5 C 1.45477 * 123.82546 * 182.07750 * 4 3 2 6 6 C 1.52969 * 113.27903 * 325.95804 * 5 4 3 7 7 C 1.50734 * 108.43494 * 44.65839 * 6 5 4 8 8 C 1.37935 * 120.37482 * 330.51531 * 7 6 5 9 9 C 1.45024 * 106.78371 * 179.82543 * 8 7 6 10 10 C 1.35051 * 106.25072 * 0.10962 * 9 8 7 11 11 N 1.34525 * 131.54076 * 150.49902 * 7 6 5 12 12 C 1.37372 * 125.05349 * 0.14198 * 11 7 6 13 13 H 1.08002 * 119.99511 * 20.69660 * 12 11 7 14 14 C 1.38989 * 119.99846 * 200.69636 * 12 11 7 15 15 N 1.31308 * 120.00276 * 10.69445 * 14 12 11 16 16 Si 1.86797 * 119.99790 * 190.69663 * 14 12 11 17 17 H 1.48495 * 109.47493 * 59.99916 * 16 14 12 18 18 H 1.48504 * 109.47443 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46974 * 299.99730 * 16 14 12 20 20 H 1.09000 * 109.46794 * 60.00024 * 1 2 3 21 21 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47033 * 300.00358 * 1 2 3 23 23 H 1.09002 * 109.47033 * 239.99642 * 2 1 3 24 24 H 1.09000 * 109.46794 * 119.99976 * 2 1 3 25 25 H 1.08998 * 108.72170 * 86.93575 * 5 4 3 26 26 H 1.08998 * 108.72433 * 204.97558 * 5 4 3 27 27 H 1.09000 * 109.63892 * 164.34370 * 6 5 4 28 28 H 1.08997 * 109.63862 * 284.97221 * 6 5 4 29 29 H 1.08000 * 126.87438 * 180.10336 * 9 8 7 30 30 H 1.07997 * 125.50812 * 180.02562 * 10 9 8 31 31 H 0.96996 * 119.99819 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.2121 2.4298 -0.0005 5 6 1.6385 3.8200 -0.0443 6 6 2.9502 4.0738 0.7006 7 6 3.9243 2.9829 0.3357 8 6 3.4691 1.7246 0.0010 9 6 4.6393 0.9214 -0.2967 10 6 5.7069 1.7302 -0.1236 11 7 5.2674 2.9750 0.2599 12 6 6.0791 4.0509 0.5257 13 1 5.7110 4.8696 1.1263 14 6 7.3739 4.0859 0.0216 15 7 7.7537 3.2043 -0.8743 16 14 8.5736 5.3873 0.6186 17 1 8.7632 5.2504 2.0850 18 1 9.8787 5.2094 -0.0674 19 1 8.0331 6.7363 0.3131 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.7652 4.1144 -1.0861 26 1 0.8588 4.4393 0.3992 27 1 3.3569 5.0416 0.4070 28 1 2.7698 4.0596 1.7754 29 1 4.6541 -0.1160 -0.5968 30 1 6.7390 1.4453 -0.2644 31 1 8.6572 3.2290 -1.2263 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821283994.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = 30.222535 kcal Electronic energy + Delta-G solvation = -14436.966057 eV Core-core repulsion = 12103.671974 eV Total energy + Delta-G solvation = -2333.294083 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.83732 -38.23534 -35.20855 -34.65232 -32.14405 -30.68469 -29.04598 -27.01584 -24.84576 -23.77152 -21.74879 -21.35045 -19.02254 -17.97074 -17.41379 -16.53179 -16.14434 -15.42998 -15.12229 -14.87915 -14.72024 -14.59281 -13.82485 -13.53135 -13.16783 -12.94875 -12.88477 -12.57329 -12.49723 -12.35819 -12.20267 -12.04211 -11.68625 -11.24653 -10.66296 -9.85807 -9.38966 -8.70033 -8.34182 -6.45306 0.83805 1.31677 1.35358 1.47099 1.95486 2.10631 2.65356 2.94572 3.05923 3.54688 4.05148 4.10087 4.28026 4.38677 4.55899 4.63465 4.66069 4.81319 4.89941 4.90535 5.02915 5.03601 5.14509 5.25250 5.31628 5.37138 5.56199 5.62895 5.76035 6.03779 6.48568 6.54770 7.14394 7.28163 7.53653 8.33892 Molecular weight = 218.11amu Principal moments of inertia in cm(-1) A = 0.051269 B = 0.008129 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.002977 B = 3443.507417 C = 3883.488279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.067 4.067 3 C 0.261 3.739 4 N -0.583 5.583 5 C 0.067 3.933 6 C -0.054 4.054 7 C -0.048 4.048 8 C -0.277 4.277 9 C -0.200 4.200 10 C -0.040 4.040 11 N -0.247 5.247 12 C -0.391 4.391 13 H 0.109 0.891 14 C 0.008 3.992 15 N -0.870 5.870 16 Si 1.013 2.987 17 H -0.260 1.260 18 H -0.268 1.268 19 H -0.259 1.259 20 H 0.046 0.954 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -1.757 1.948 6.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.105 4.105 3 C 0.076 3.924 4 N -0.295 5.295 5 C -0.063 4.063 6 C -0.093 4.093 7 C -0.173 4.173 8 C -0.287 4.287 9 C -0.225 4.225 10 C -0.173 4.173 11 N 0.096 4.904 12 C -0.519 4.519 13 H 0.126 0.874 14 C -0.199 4.199 15 N -0.501 5.501 16 Si 0.833 3.167 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.183 1.183 20 H 0.066 0.934 21 H 0.093 0.907 22 H 0.066 0.934 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.983 -1.233 1.876 6.391 hybrid contribution 1.956 0.832 -0.012 2.125 sum -4.028 -0.401 1.864 4.456 Atomic orbital electron populations 1.21462 0.93367 1.01518 1.01854 1.20492 0.97403 0.88831 1.03742 1.22943 0.86421 0.95781 0.87251 1.71089 1.37612 0.99797 1.21038 1.21768 0.94174 0.91174 0.99177 1.20311 0.93355 0.95531 1.00118 1.20896 0.84579 0.98436 1.13348 1.20167 0.94239 0.94808 1.19502 1.21515 0.90564 0.99145 1.11242 1.22201 0.99379 0.84323 1.11440 1.39822 1.03621 1.08380 1.38613 1.20322 0.95951 1.00284 1.35302 0.87355 1.26601 0.99492 1.00487 0.93330 1.69987 1.20500 1.35835 1.23761 0.84718 0.76090 0.76966 0.78976 1.18440 1.19235 1.18327 0.93442 0.90708 0.93379 0.88913 0.89065 0.92953 0.87857 0.91055 0.91581 0.83352 0.82984 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.18 71.98 0.66 -2.52 16 2 C -0.07 -1.99 6.36 29.85 0.19 -1.80 16 3 C 0.26 10.42 6.92 45.08 0.31 10.74 16 4 N -0.58 -23.11 9.56 -330.07 -3.15 -26.27 16 5 C 0.07 2.57 6.96 86.56 0.60 3.17 16 6 C -0.05 -2.28 6.32 29.85 0.19 -2.09 16 7 C -0.05 -2.40 6.71 42.09 0.28 -2.12 16 8 C -0.28 -13.11 6.19 -19.36 -0.12 -13.23 16 9 C -0.20 -9.52 11.08 23.28 0.26 -9.26 16 10 C -0.04 -2.16 9.98 83.08 0.83 -1.33 16 11 N -0.25 -13.58 2.84 -335.34 -0.95 -14.53 16 12 C -0.39 -21.02 9.86 84.01 0.83 -20.19 16 13 H 0.11 5.50 7.85 -2.91 -0.02 5.48 16 14 C 0.01 0.41 5.36 84.95 0.46 0.87 16 15 N -0.87 -46.00 10.83 21.66 0.23 -45.76 16 16 Si 1.01 38.42 29.56 68.60 2.03 40.45 16 17 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 18 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 19 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 20 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 23 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 28 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.15 5.94 8.06 -2.91 -0.02 5.91 16 30 H 0.15 8.34 6.35 -2.91 -0.02 8.32 16 31 H 0.29 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -61.59 262.80 3.75 -57.83 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 1.11 Total: 26.05 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 4.49 Total: -37.77 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -3.87 Total: -86.56 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -61.59 3.75 -57.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821283994.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.056 kcal (2) G-P(sol) polarization free energy of solvation -61.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds