Wall clock time and date at job start Mon Mar 30 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99859 * 2 1 4 4 H 1.48495 * 109.47025 * 270.00098 * 3 2 1 5 5 H 1.48502 * 109.47149 * 29.99787 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99674 * 3 2 1 7 7 C 1.38810 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00014 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00142 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00136 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47269 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.66825 * 61.76345 * 11 10 9 13 13 C 1.54707 * 110.90905 * 185.08802 * 11 10 9 14 14 C 1.51635 * 101.91994 * 143.70744 * 13 11 10 15 15 C 1.37746 * 132.17419 * 164.63524 * 14 13 11 16 16 C 1.38350 * 119.97912 * 180.72137 * 15 14 13 17 17 C 1.38287 * 119.76292 * 359.41219 * 16 15 14 18 18 C 1.37927 * 120.35177 * 0.11334 * 17 16 15 19 19 C 1.38884 * 107.04108 * 344.50411 * 14 13 11 20 20 O 1.36129 * 111.23873 * 359.09695 * 19 14 13 21 21 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 22 22 H 0.97006 * 119.99702 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.47236 * 60.00019 * 10 9 7 24 24 H 1.09003 * 109.47066 * 300.00513 * 10 9 7 25 25 H 1.09002 * 110.93903 * 261.86614 * 13 11 10 26 26 H 1.09004 * 110.93642 * 25.51302 * 13 11 10 27 27 H 1.07999 * 120.01310 * 0.45559 * 15 14 13 28 28 H 1.08002 * 120.12170 * 179.69923 * 16 15 14 29 29 H 1.08002 * 119.82344 * 180.12457 * 17 16 15 30 30 H 1.08009 * 119.88127 * 180.11661 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0032 12 1 5.9058 -1.6461 0.9017 13 6 6.4224 -3.5056 -0.1237 14 6 7.5926 -3.0734 -0.9858 15 6 8.8100 -3.6595 -1.2537 16 6 9.7154 -3.0237 -2.0845 17 6 9.3880 -1.8062 -2.6528 18 6 8.1656 -1.2223 -2.3937 19 6 7.2502 -1.8538 -1.5550 20 8 6.0007 -1.4669 -1.1778 21 1 -0.4850 0.8400 0.0004 22 1 3.8646 -0.3619 0.0014 23 1 3.8493 -3.0430 -0.8875 24 1 3.8485 -3.0418 0.8924 25 1 6.7638 -3.8491 0.8528 26 1 5.8344 -4.2765 -0.6219 27 1 9.0595 -4.6129 -0.8120 28 1 10.6725 -3.4788 -2.2923 29 1 10.0933 -1.3100 -3.3031 30 1 7.9171 -0.2721 -2.8430 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038010004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:20 Heat of formation + Delta-G solvation = 8.906786 kcal Electronic energy + Delta-G solvation = -14147.433801 eV Core-core repulsion = 11715.496735 eV Total energy + Delta-G solvation = -2431.937065 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99942 -37.49116 -34.79829 -32.71678 -31.45249 -29.97580 -29.34581 -25.79607 -22.65402 -22.26825 -21.61285 -21.00625 -17.66903 -17.37414 -16.61423 -15.92075 -15.08952 -14.45303 -14.19682 -13.58633 -13.53134 -13.08371 -12.99276 -12.72825 -12.23756 -12.05966 -11.83100 -11.73570 -10.95505 -10.82673 -10.65527 -10.51491 -10.11183 -9.58189 -8.92522 -8.90194 -8.05260 -7.24121 -5.75997 -3.11952 1.27441 1.39197 3.37432 3.42542 3.46799 3.48628 3.72539 4.47740 4.59070 4.62261 4.86220 5.00900 5.11755 5.26528 5.34197 5.47743 5.54455 5.59964 5.71680 5.77624 5.88781 6.03481 6.29974 6.36500 6.44178 6.46481 6.55493 6.72292 7.35262 7.98327 8.42412 9.21243 9.93673 10.13304 11.42121 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050316 B = 0.006722 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.350309 B = 4164.561412 C = 4587.291843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.163 3.837 11 C 0.071 3.929 12 H 0.086 0.914 13 C -0.102 4.102 14 C -0.177 4.177 15 C -0.071 4.071 16 C -0.159 4.159 17 C -0.087 4.087 18 C -0.145 4.145 19 C 0.115 3.885 20 O -0.289 6.289 21 H 0.260 0.740 22 H 0.365 0.635 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.826 -6.391 -2.101 20.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.398 5.398 10 C 0.036 3.964 11 C 0.015 3.985 12 H 0.104 0.896 13 C -0.140 4.140 14 C -0.178 4.178 15 C -0.089 4.089 16 C -0.177 4.177 17 C -0.105 4.105 18 C -0.164 4.164 19 C 0.069 3.931 20 O -0.202 6.202 21 H 0.070 0.930 22 H 0.198 0.802 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 19.402 -6.308 -2.183 20.518 hybrid contribution 0.556 1.119 0.057 1.250 sum 19.957 -5.190 -2.127 20.731 Atomic orbital electron populations 1.69705 1.05098 1.25897 1.57430 1.24651 0.95226 0.97254 1.01792 0.86527 0.79150 0.84817 0.77959 1.20936 1.21698 1.20316 1.19041 0.80421 0.94845 1.43350 0.89127 1.42600 1.04088 1.02029 1.91121 1.20804 0.85378 0.90352 0.99898 1.23824 0.97434 0.90445 0.86781 0.89577 1.21805 0.93607 0.98501 1.00051 1.20883 0.96921 0.96288 1.03731 1.20280 0.91873 0.99313 0.97475 1.20960 0.99986 0.96590 1.00202 1.20827 0.95424 0.95408 0.98839 1.20303 0.92710 1.01336 1.02064 1.19768 0.85663 0.92501 0.95192 1.87005 1.26599 1.63310 1.43306 0.93018 0.80155 0.94455 0.93375 0.89104 0.88753 0.86025 0.85814 0.85475 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.83 13.97 55.49 0.78 -29.05 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.89 22.94 27.74 -169.99 -4.71 18.22 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 7 C -0.25 -7.19 10.47 -15.06 -0.16 -7.35 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.75 -18.73 5.34 -59.91 -0.32 -19.05 16 10 C 0.16 3.21 5.97 -4.05 -0.02 3.19 16 11 C 0.07 1.18 3.68 -25.84 -0.10 1.09 16 12 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 13 C -0.10 -1.33 6.65 -26.52 -0.18 -1.51 16 14 C -0.18 -2.45 6.27 -104.10 -0.65 -3.10 16 15 C -0.07 -0.81 10.03 -39.72 -0.40 -1.21 16 16 C -0.16 -1.66 10.07 -39.52 -0.40 -2.06 16 17 C -0.09 -0.96 10.02 -39.68 -0.40 -1.35 16 18 C -0.15 -1.99 10.06 -39.31 -0.40 -2.38 16 19 C 0.12 1.83 7.04 -38.95 -0.27 1.56 16 20 O -0.29 -5.40 10.68 -20.15 -0.22 -5.62 16 21 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 22 H 0.37 9.09 5.48 -40.82 -0.22 8.86 16 23 H 0.04 0.76 8.12 -51.93 -0.42 0.33 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 1.17 7.91 -51.93 -0.41 0.76 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 258.75 15.07 3.90 3.90 Total: -1.00 -33.09 258.75 -7.25 -40.34 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -3.61 Total: 4.29 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.07 Total: -13.03 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.46 Total: -48.10 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.22 Total: -5.62 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.09 -7.25 -40.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038010004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.244 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds