Wall clock time and date at job start Mon Mar 30 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99859 * 2 1 4 4 H 1.48495 * 109.47025 * 270.00098 * 3 2 1 5 5 H 1.48502 * 109.47149 * 29.99787 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99674 * 3 2 1 7 7 C 1.38810 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00014 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00142 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00136 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47269 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.66825 * 61.76345 * 11 10 9 13 13 C 1.54707 * 110.90905 * 185.08802 * 11 10 9 14 14 C 1.51635 * 101.91994 * 143.70744 * 13 11 10 15 15 C 1.37746 * 132.17419 * 164.63524 * 14 13 11 16 16 C 1.38350 * 119.97912 * 180.72137 * 15 14 13 17 17 C 1.38287 * 119.76292 * 359.41219 * 16 15 14 18 18 C 1.37927 * 120.35177 * 0.11334 * 17 16 15 19 19 C 1.38884 * 107.04108 * 344.50411 * 14 13 11 20 20 O 1.36129 * 111.23873 * 359.09695 * 19 14 13 21 21 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 22 22 H 0.97006 * 119.99702 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.47236 * 60.00019 * 10 9 7 24 24 H 1.09003 * 109.47066 * 300.00513 * 10 9 7 25 25 H 1.09002 * 110.93903 * 261.86614 * 13 11 10 26 26 H 1.09004 * 110.93642 * 25.51302 * 13 11 10 27 27 H 1.07999 * 120.01310 * 0.45559 * 15 14 13 28 28 H 1.08002 * 120.12170 * 179.69923 * 16 15 14 29 29 H 1.08002 * 119.82344 * 180.12457 * 17 16 15 30 30 H 1.08009 * 119.88127 * 180.11661 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0022 11 6 5.6164 -2.1912 0.0032 12 1 5.9058 -1.6461 0.9017 13 6 6.4224 -3.5056 -0.1237 14 6 7.5926 -3.0734 -0.9858 15 6 8.8100 -3.6595 -1.2537 16 6 9.7154 -3.0237 -2.0845 17 6 9.3880 -1.8062 -2.6528 18 6 8.1656 -1.2223 -2.3937 19 6 7.2502 -1.8538 -1.5550 20 8 6.0007 -1.4669 -1.1778 21 1 -0.4850 0.8400 0.0004 22 1 3.8646 -0.3619 0.0014 23 1 3.8493 -3.0430 -0.8875 24 1 3.8485 -3.0418 0.8924 25 1 6.7638 -3.8491 0.8528 26 1 5.8344 -4.2765 -0.6219 27 1 9.0595 -4.6129 -0.8120 28 1 10.6725 -3.4788 -2.2923 29 1 10.0933 -1.3100 -3.3031 30 1 7.9171 -0.2721 -2.8430 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038010004.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:20 Heat of formation + Delta-G solvation = -13.228824 kcal Electronic energy + Delta-G solvation = -14148.393673 eV Core-core repulsion = 11715.496735 eV Total energy + Delta-G solvation = -2432.896937 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.09516 -38.53287 -36.66770 -34.10452 -33.25621 -30.93012 -30.78274 -27.31620 -24.37571 -23.41647 -22.72918 -22.31053 -19.80267 -18.46356 -17.69211 -17.15398 -16.47934 -16.29669 -15.27259 -15.20029 -14.80364 -14.65688 -14.09703 -14.00275 -13.88037 -13.53243 -13.20080 -12.88845 -12.62330 -12.25571 -12.19259 -11.88241 -11.71885 -11.64663 -11.07437 -9.82155 -9.37463 -9.07951 -8.07691 -5.41558 0.36264 0.44205 1.33864 1.37412 1.44194 2.27530 2.44104 2.79054 3.23840 3.35120 3.45263 3.83515 3.99821 4.00120 4.19194 4.23766 4.37007 4.55454 4.67734 4.69773 4.76992 4.92036 5.01523 5.17707 5.42106 5.50954 5.56581 5.68206 5.78407 6.15873 6.28904 7.01410 7.76651 7.95551 9.13519 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.050316 B = 0.006722 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.350309 B = 4164.561412 C = 4587.291843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.058 4.058 3 Si 0.953 3.047 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.239 4.239 8 H 0.063 0.937 9 N -0.758 5.758 10 C 0.159 3.841 11 C 0.072 3.928 12 H 0.091 0.909 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.073 4.073 16 C -0.149 4.149 17 C -0.086 4.086 18 C -0.162 4.162 19 C 0.069 3.931 20 O -0.326 6.326 21 H 0.260 0.740 22 H 0.366 0.634 23 H 0.029 0.971 24 H 0.064 0.936 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.158 0.842 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.228 -7.000 -2.088 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.250 4.250 3 Si 0.780 3.220 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.182 1.182 7 C -0.370 4.370 8 H 0.081 0.919 9 N -0.404 5.404 10 C 0.033 3.967 11 C 0.017 3.983 12 H 0.109 0.891 13 C -0.129 4.129 14 C -0.187 4.187 15 C -0.091 4.091 16 C -0.167 4.167 17 C -0.103 4.103 18 C -0.181 4.181 19 C 0.024 3.976 20 O -0.241 6.241 21 H 0.069 0.931 22 H 0.199 0.801 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.138 0.862 26 H 0.116 0.884 27 H 0.169 0.831 28 H 0.178 0.822 29 H 0.176 0.824 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 22.857 -6.951 -2.169 23.989 hybrid contribution -0.416 1.185 -0.012 1.256 sum 22.441 -5.766 -2.181 23.272 Atomic orbital electron populations 1.69866 1.06915 1.26797 1.59447 1.25444 0.96099 1.01050 1.02417 0.85444 0.78557 0.80023 0.77980 1.20916 1.21444 1.18190 1.19068 0.82393 0.93813 1.41690 0.91925 1.42648 1.02712 1.04037 1.91021 1.20987 0.87518 0.88242 0.99970 1.23719 0.95281 0.92610 0.86736 0.89130 1.21762 0.92972 0.96504 1.01658 1.21069 0.97954 0.95776 1.03870 1.20696 0.90831 1.00320 0.97244 1.21461 1.00975 0.95861 0.98389 1.21231 0.94656 0.95736 0.98713 1.20589 0.93646 1.01721 1.02130 1.20155 0.85456 0.94403 0.97554 1.86923 1.28595 1.64429 1.44164 0.93142 0.80106 0.95271 0.91790 0.86212 0.88398 0.83086 0.82231 0.82449 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.20 13.97 21.65 0.30 -63.89 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.95 47.90 27.74 68.60 1.90 49.80 16 4 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.26 -11.93 6.52 99.48 0.65 -11.29 16 7 C -0.24 -14.21 10.47 84.03 0.88 -13.33 16 8 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 9 N -0.76 -37.93 5.34 -343.46 -1.83 -39.76 16 10 C 0.16 6.25 5.97 86.38 0.52 6.77 16 11 C 0.07 2.35 3.68 31.17 0.11 2.47 16 12 H 0.09 2.79 8.14 -2.38 -0.02 2.78 16 13 C -0.09 -2.21 6.65 30.73 0.20 -2.01 16 14 C -0.19 -4.74 6.27 -19.53 -0.12 -4.86 16 15 C -0.07 -1.39 10.03 22.18 0.22 -1.17 16 16 C -0.15 -2.46 10.07 22.31 0.22 -2.24 16 17 C -0.09 -1.62 10.02 22.21 0.22 -1.40 16 18 C -0.16 -4.26 10.06 22.45 0.23 -4.03 16 19 C 0.07 2.16 7.04 22.68 0.16 2.32 16 20 O -0.33 -12.29 10.68 -95.02 -1.01 -13.30 16 21 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 22 H 0.37 18.05 5.48 -92.70 -0.51 17.55 16 23 H 0.03 1.20 8.12 -2.39 -0.02 1.18 16 24 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.10 2.26 7.91 -2.38 -0.02 2.25 16 27 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.12 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -73.08 258.75 3.04 -70.04 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.57 Total: 17.67 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.11 Total: -20.56 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -1.53 Total: -103.66 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.01 Total: -13.30 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.90 Total: 49.80 kcal Total: -73.08 3.04 -70.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038010004.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.814 kcal (2) G-P(sol) polarization free energy of solvation -73.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds