Wall clock time and date at job start Mon Mar 30 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99635 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99549 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46939 * 180.02562 * 10 9 7 12 12 H 1.09010 * 110.66256 * 303.23360 * 11 10 9 13 13 C 1.54703 * 110.74921 * 179.81952 * 11 10 9 14 14 C 1.51649 * 101.93070 * 216.39347 * 13 11 10 15 15 C 1.37743 * 132.17569 * 195.85692 * 14 13 11 16 16 C 1.38347 * 119.97354 * 179.02687 * 15 14 13 17 17 C 1.38289 * 119.77200 * 359.97438 * 16 15 14 18 18 C 1.37928 * 120.35055 * 0.22079 * 17 16 15 19 19 C 1.38892 * 107.03477 * 15.35433 * 14 13 11 20 20 O 1.36137 * 111.23264 * 1.11602 * 19 14 13 21 21 H 0.96998 * 119.99442 * 359.97438 * 1 2 3 22 22 H 0.96993 * 120.00149 * 359.97438 * 9 7 2 23 23 H 1.09008 * 109.47182 * 299.99726 * 10 9 7 24 24 H 1.08994 * 109.47256 * 60.00002 * 10 9 7 25 25 H 1.08999 * 110.93976 * 334.55264 * 13 11 10 26 26 H 1.09001 * 110.94181 * 98.23922 * 13 11 10 27 27 H 1.07997 * 120.01265 * 359.00098 * 15 14 13 28 28 H 1.08002 * 120.11567 * 179.97438 * 16 15 14 29 29 H 1.07994 * 119.82671 * 180.19928 * 17 16 15 30 30 H 1.07995 * 119.88286 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.6163 -2.1913 0.0013 12 1 5.8930 -1.5711 -0.8514 13 6 6.4195 -3.5135 0.0059 14 6 7.6019 -3.1591 0.8869 15 6 8.8239 -3.7639 1.0820 16 6 9.7425 -3.2016 1.9504 17 6 9.4290 -2.0325 2.6192 18 6 8.2043 -1.4275 2.4283 19 6 7.2718 -1.9897 1.5597 20 8 6.0180 -1.5707 1.2343 21 1 -0.4849 0.8401 0.0004 22 1 3.8646 -0.3622 0.0004 23 1 3.8484 -3.0427 0.8898 24 1 3.8491 -3.0422 -0.8902 25 1 5.8355 -4.3226 0.4446 26 1 6.7478 -3.7734 -1.0005 27 1 9.0647 -4.6768 0.5577 28 1 10.7013 -3.6741 2.1054 29 1 10.1466 -1.5912 3.2948 30 1 7.9672 -0.5148 2.9548 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038010005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:23 Heat of formation + Delta-G solvation = -13.315033 kcal Electronic energy + Delta-G solvation = -14131.319235 eV Core-core repulsion = 11698.418560 eV Total energy + Delta-G solvation = -2432.900676 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.09560 -38.53170 -36.68062 -34.10645 -33.25435 -30.93165 -30.78165 -27.31469 -24.37309 -23.40883 -22.73623 -22.32974 -19.80480 -18.46035 -17.69199 -17.15506 -16.47922 -16.29632 -15.25619 -15.20994 -14.79960 -14.64738 -14.10293 -13.99955 -13.91642 -13.51806 -13.20559 -12.88921 -12.62175 -12.25781 -12.19207 -11.88473 -11.72148 -11.64434 -11.07664 -9.82158 -9.37949 -9.08220 -8.07731 -5.41744 0.36217 0.44043 1.33902 1.37566 1.44263 2.28054 2.44110 2.79184 3.23979 3.34074 3.44998 3.82860 3.99569 4.00180 4.19598 4.23956 4.36802 4.55210 4.67427 4.69649 4.76404 4.92533 5.01249 5.17573 5.42126 5.50984 5.56606 5.68321 5.78219 6.15757 6.28850 7.01157 7.76177 7.95172 9.13504 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.051447 B = 0.006608 C = 0.006040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.114123 B = 4236.478966 C = 4634.809854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.058 4.058 3 Si 0.953 3.047 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.239 4.239 8 H 0.062 0.938 9 N -0.759 5.759 10 C 0.159 3.841 11 C 0.073 3.927 12 H 0.090 0.910 13 C -0.092 4.092 14 C -0.186 4.186 15 C -0.073 4.073 16 C -0.149 4.149 17 C -0.086 4.086 18 C -0.162 4.162 19 C 0.069 3.931 20 O -0.326 6.326 21 H 0.260 0.740 22 H 0.366 0.634 23 H 0.029 0.971 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.158 0.842 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.274 -7.169 1.756 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.250 4.250 3 Si 0.780 3.220 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.370 4.370 8 H 0.080 0.920 9 N -0.404 5.404 10 C 0.033 3.967 11 C 0.017 3.983 12 H 0.108 0.892 13 C -0.129 4.129 14 C -0.187 4.187 15 C -0.091 4.091 16 C -0.167 4.167 17 C -0.103 4.103 18 C -0.180 4.180 19 C 0.024 3.976 20 O -0.241 6.241 21 H 0.069 0.931 22 H 0.199 0.801 23 H 0.047 0.953 24 H 0.083 0.917 25 H 0.117 0.883 26 H 0.137 0.863 27 H 0.169 0.831 28 H 0.178 0.822 29 H 0.176 0.824 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 22.903 -7.128 1.851 24.058 hybrid contribution -0.424 1.187 0.038 1.261 sum 22.479 -5.941 1.889 23.328 Atomic orbital electron populations 1.69868 1.06941 1.26808 1.59407 1.25453 0.96108 1.01084 1.02380 0.85440 0.78585 0.79963 0.77985 1.20909 1.21446 1.18104 1.19064 0.82391 0.93811 1.41752 0.91965 1.42662 1.02735 1.04003 1.91043 1.20977 0.87539 0.88233 0.99956 1.23713 0.95159 0.94281 0.85164 0.89188 1.21757 0.92854 0.96600 1.01697 1.21074 0.97836 0.96733 1.03010 1.20695 0.90710 0.99964 0.97742 1.21462 1.00926 0.96685 0.97587 1.21233 0.94754 0.95483 0.98879 1.20592 0.93334 1.02280 1.01820 1.20158 0.85411 0.94276 0.97760 1.86929 1.28086 1.68234 1.40891 0.93136 0.80129 0.95328 0.91718 0.88343 0.86263 0.83099 0.82233 0.82435 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.14 13.97 21.65 0.30 -63.84 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.95 47.72 27.73 68.60 1.90 49.62 16 4 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.26 -11.80 6.52 99.48 0.65 -11.15 16 7 C -0.24 -14.22 10.47 84.04 0.88 -13.34 16 8 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16 9 N -0.76 -37.85 5.39 -343.44 -1.85 -39.70 16 10 C 0.16 6.27 5.93 86.38 0.51 6.78 16 11 C 0.07 2.37 3.66 31.18 0.11 2.48 16 12 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 13 C -0.09 -2.22 6.65 30.73 0.20 -2.01 16 14 C -0.19 -4.72 6.27 -19.52 -0.12 -4.85 16 15 C -0.07 -1.39 10.03 22.18 0.22 -1.17 16 16 C -0.15 -2.44 10.07 22.31 0.22 -2.22 16 17 C -0.09 -1.61 10.02 22.21 0.22 -1.38 16 18 C -0.16 -4.21 10.06 22.45 0.23 -3.98 16 19 C 0.07 2.14 7.04 22.68 0.16 2.30 16 20 O -0.33 -12.25 10.79 -95.11 -1.03 -13.28 16 21 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 22 H 0.37 17.93 5.53 -92.71 -0.51 17.42 16 23 H 0.03 1.18 8.14 -2.38 -0.02 1.17 16 24 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.10 2.27 7.92 -2.39 -0.02 2.25 16 26 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 28 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -72.97 258.95 3.00 -69.97 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.57 Total: 17.71 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 3.11 Total: -20.49 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -1.55 Total: -103.53 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.03 Total: -13.28 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.90 Total: 49.62 kcal Total: -72.97 3.00 -69.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038010005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.655 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds