Wall clock time and date at job start Mon Mar 30 2020 03:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47215 * 2 1 4 4 H 1.08993 * 109.46779 * 305.63332 * 3 2 1 5 5 C 1.50700 * 109.46831 * 65.63344 * 3 2 1 6 6 H 1.08003 * 120.00423 * 35.30112 * 5 3 2 7 7 C 1.37881 * 119.99891 * 215.30235 * 5 3 2 8 8 N 1.31510 * 119.99901 * 173.05892 * 7 5 3 9 9 Si 1.86802 * 119.99647 * 353.05541 * 7 5 3 10 10 H 1.48495 * 109.47222 * 92.15949 * 9 7 5 11 11 H 1.48500 * 109.46781 * 212.15594 * 9 7 5 12 12 H 1.48503 * 109.47343 * 332.15518 * 9 7 5 13 13 C 1.50697 * 109.47079 * 185.63054 * 3 2 1 14 14 O 1.21258 * 120.00136 * 270.00493 * 13 3 2 15 15 C 1.47166 * 119.99964 * 90.00284 * 13 3 2 16 16 C 1.40292 * 120.58661 * 179.97438 * 15 13 3 17 17 C 1.38290 * 118.26565 * 180.02562 * 16 15 13 18 18 C 1.38391 * 119.32715 * 359.97438 * 17 16 15 19 19 N 1.31951 * 121.14510 * 0.02562 * 18 17 16 20 20 C 1.31645 * 121.90606 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47498 * 183.56153 * 1 2 3 22 22 H 1.09002 * 109.47266 * 303.56581 * 1 2 3 23 23 H 1.09003 * 109.47114 * 63.56882 * 1 2 3 24 24 H 1.09005 * 109.47047 * 239.99767 * 2 1 3 25 25 H 1.09003 * 109.46661 * 120.00354 * 2 1 3 26 26 H 0.97003 * 119.99703 * 180.02562 * 8 7 5 27 27 H 1.08006 * 120.86948 * 359.97438 * 16 15 13 28 28 H 1.07995 * 120.33276 * 180.02562 * 17 16 15 29 29 H 1.08009 * 119.42630 * 180.02562 * 18 17 16 30 30 H 1.08007 * 119.73179 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 1.6547 2.1114 1.2943 6 1 1.6420 1.5435 2.2129 7 6 1.3185 3.4486 1.3058 8 7 0.8518 3.9998 2.4048 9 14 1.5260 4.4771 -0.2397 10 1 0.2592 4.4675 -1.0145 11 1 1.8655 5.8729 0.1365 12 1 2.6182 3.9085 -1.0698 13 6 3.5405 1.4448 -0.1394 14 8 4.2413 1.4112 0.8496 15 6 4.1553 1.4876 -1.4758 16 6 5.5508 1.4907 -1.6199 17 6 6.0771 1.5323 -2.8980 18 6 5.2194 1.5686 -3.9834 19 7 3.9101 1.5647 -3.8191 20 6 3.3590 1.5259 -2.6242 21 1 -0.3634 -1.0256 0.0638 22 1 -0.3634 0.5682 0.8563 23 1 -0.3633 0.4574 -0.9203 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 0.6149 4.9404 2.4128 27 1 6.1972 1.4622 -0.7551 28 1 7.1466 1.5356 -3.0476 29 1 5.6287 1.6007 -4.9824 30 1 2.2830 1.5237 -2.5304 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:43 Heat of formation + Delta-G solvation = -13.583289 kcal Electronic energy + Delta-G solvation = -14594.959008 eV Core-core repulsion = 12162.046700 eV Total energy + Delta-G solvation = -2432.912308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.13348 -38.13875 -34.54312 -32.28403 -32.06570 -31.26837 -28.04565 -24.90883 -23.57569 -23.06133 -20.84069 -18.92320 -17.45486 -16.87929 -15.97802 -15.60632 -14.58528 -14.24948 -14.04082 -13.64540 -13.47675 -13.00644 -12.94714 -12.60823 -12.05247 -11.84595 -11.29027 -11.10836 -10.94425 -10.51016 -9.90621 -9.75453 -9.67414 -9.50987 -9.28999 -8.96074 -8.88584 -8.42847 -6.17711 -4.16226 0.84426 1.35671 3.10509 3.18992 3.27084 3.31078 4.09552 4.30658 4.43474 4.72932 4.90215 5.09401 5.13554 5.23785 5.56649 5.70978 5.85794 5.93323 6.06339 6.15943 6.22622 6.39220 6.52517 6.68885 6.74328 6.85548 7.03307 7.16509 7.55555 7.99486 8.31977 8.54646 8.91734 9.42713 10.95116 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.011132 C = 0.010167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.936065 B = 2514.588743 C = 2753.260184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.022 4.022 4 H 0.053 0.947 5 C -0.493 4.493 6 H 0.082 0.918 7 C 0.076 3.924 8 N -0.888 5.888 9 Si 0.860 3.140 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.389 3.611 14 O -0.444 6.444 15 C -0.204 4.204 16 C -0.034 4.034 17 C -0.188 4.188 18 C 0.107 3.893 19 N -0.495 5.495 20 C 0.141 3.859 21 H 0.038 0.962 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.266 0.734 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.155 0.845 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -5.045 -11.286 13.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.135 4.135 3 C -0.042 4.042 4 H 0.071 0.929 5 C -0.531 4.531 6 H 0.100 0.900 7 C -0.127 4.127 8 N -0.525 5.525 9 Si 0.687 3.313 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.264 3.736 14 O -0.317 6.317 15 C -0.207 4.207 16 C -0.060 4.060 17 C -0.208 4.208 18 C -0.049 4.049 19 N -0.204 5.204 20 C -0.016 4.016 21 H 0.057 0.943 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.159 0.841 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.631 -4.851 -11.389 13.600 hybrid contribution 0.802 0.858 -0.147 1.184 sum 6.433 -3.993 -11.536 13.799 Atomic orbital electron populations 1.21661 0.95481 0.99895 1.02668 1.21301 0.96495 0.95717 0.99942 1.19717 0.88476 0.95917 1.00041 0.92879 1.20656 1.44598 0.94989 0.92811 0.90031 1.25050 0.94171 0.97641 0.95839 1.69877 1.42455 1.12867 1.27323 0.87099 0.79353 0.80616 0.84235 1.19552 1.21019 1.18960 1.23850 0.94258 0.70377 0.85157 1.90378 1.65667 1.35241 1.40403 1.22364 0.95013 1.04369 0.98953 1.21952 0.94752 0.91308 0.97964 1.22088 1.01407 1.03862 0.93397 1.22910 0.89100 0.93748 0.99155 1.67703 1.13381 1.13087 1.26201 1.23289 1.00861 0.90896 0.86571 0.94337 0.90641 0.93784 0.94324 0.92256 0.92424 0.84061 0.84638 0.82766 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.79 37.16 0.36 -2.12 16 2 C -0.10 -1.86 5.37 -26.73 -0.14 -2.00 16 3 C -0.02 -0.49 1.13 -92.92 -0.10 -0.60 16 4 H 0.05 1.15 4.09 -51.93 -0.21 0.93 16 5 C -0.49 -13.44 7.25 -34.44 -0.25 -13.69 16 6 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 9 Si 0.86 20.86 26.80 -169.99 -4.56 16.30 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.26 -6.16 6.57 56.52 0.37 -5.79 16 13 C 0.39 8.64 5.57 -30.69 -0.17 8.47 16 14 O -0.44 -11.06 16.42 5.58 0.09 -10.97 16 15 C -0.20 -3.83 5.87 -104.92 -0.62 -4.45 16 16 C -0.03 -0.55 9.72 -38.79 -0.38 -0.92 16 17 C -0.19 -2.40 10.10 -39.51 -0.40 -2.80 16 18 C 0.11 1.41 11.17 -17.44 -0.19 1.21 16 19 N -0.49 -7.96 10.34 -12.83 -0.13 -8.09 16 20 C 0.14 2.46 10.54 -17.05 -0.18 2.28 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.53 7.29 -51.93 -0.38 1.15 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.14 2.17 7.74 -52.48 -0.41 1.76 16 28 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.16 1.44 8.06 -52.48 -0.42 1.01 16 30 H 0.17 2.71 6.38 -52.48 -0.33 2.37 16 LS Contribution 260.82 15.07 3.93 3.93 Total: -1.00 -31.36 260.82 -5.52 -36.88 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.46 Total: 0.42 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.17 Total: -12.58 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.64 Total: -33.98 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.56 Total: 16.30 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.36 -5.52 -36.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.299 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds