Wall clock time and date at job start Mon Mar 30 2020 03:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47215 * 2 1 4 4 H 1.08993 * 109.46779 * 305.63332 * 3 2 1 5 5 C 1.50700 * 109.46831 * 65.63344 * 3 2 1 6 6 H 1.08003 * 120.00423 * 35.30112 * 5 3 2 7 7 C 1.37881 * 119.99891 * 215.30235 * 5 3 2 8 8 N 1.31510 * 119.99901 * 173.05892 * 7 5 3 9 9 Si 1.86802 * 119.99647 * 353.05541 * 7 5 3 10 10 H 1.48495 * 109.47222 * 92.15949 * 9 7 5 11 11 H 1.48500 * 109.46781 * 212.15594 * 9 7 5 12 12 H 1.48503 * 109.47343 * 332.15518 * 9 7 5 13 13 C 1.50697 * 109.47079 * 185.63054 * 3 2 1 14 14 O 1.21258 * 120.00136 * 270.00493 * 13 3 2 15 15 C 1.47166 * 119.99964 * 90.00284 * 13 3 2 16 16 C 1.40292 * 120.58661 * 179.97438 * 15 13 3 17 17 C 1.38290 * 118.26565 * 180.02562 * 16 15 13 18 18 C 1.38391 * 119.32715 * 359.97438 * 17 16 15 19 19 N 1.31951 * 121.14510 * 0.02562 * 18 17 16 20 20 C 1.31645 * 121.90606 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47498 * 183.56153 * 1 2 3 22 22 H 1.09002 * 109.47266 * 303.56581 * 1 2 3 23 23 H 1.09003 * 109.47114 * 63.56882 * 1 2 3 24 24 H 1.09005 * 109.47047 * 239.99767 * 2 1 3 25 25 H 1.09003 * 109.46661 * 120.00354 * 2 1 3 26 26 H 0.97003 * 119.99703 * 180.02562 * 8 7 5 27 27 H 1.08006 * 120.86948 * 359.97438 * 16 15 13 28 28 H 1.07995 * 120.33276 * 180.02562 * 17 16 15 29 29 H 1.08009 * 119.42630 * 180.02562 * 18 17 16 30 30 H 1.08007 * 119.73179 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 1.6547 2.1114 1.2943 6 1 1.6420 1.5435 2.2129 7 6 1.3185 3.4486 1.3058 8 7 0.8518 3.9998 2.4048 9 14 1.5260 4.4771 -0.2397 10 1 0.2592 4.4675 -1.0145 11 1 1.8655 5.8729 0.1365 12 1 2.6182 3.9085 -1.0698 13 6 3.5405 1.4448 -0.1394 14 8 4.2413 1.4112 0.8496 15 6 4.1553 1.4876 -1.4758 16 6 5.5508 1.4907 -1.6199 17 6 6.0771 1.5323 -2.8980 18 6 5.2194 1.5686 -3.9834 19 7 3.9101 1.5647 -3.8191 20 6 3.3590 1.5259 -2.6242 21 1 -0.3634 -1.0256 0.0638 22 1 -0.3634 0.5682 0.8563 23 1 -0.3633 0.4574 -0.9203 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 0.6149 4.9404 2.4128 27 1 6.1972 1.4622 -0.7551 28 1 7.1466 1.5356 -3.0476 29 1 5.6287 1.6007 -4.9824 30 1 2.2830 1.5237 -2.5304 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:43 Heat of formation + Delta-G solvation = -34.436900 kcal Electronic energy + Delta-G solvation = -14595.863288 eV Core-core repulsion = 12162.046700 eV Total energy + Delta-G solvation = -2433.816589 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.45467 -39.74075 -36.32866 -34.10254 -33.48684 -32.52607 -29.77203 -26.61878 -25.00650 -24.35999 -22.37484 -20.59778 -19.28800 -18.29067 -17.33756 -17.01300 -16.47481 -15.72956 -15.59667 -15.18672 -14.95667 -14.66781 -14.38545 -14.14013 -13.58138 -13.17038 -13.00468 -12.85807 -12.67953 -12.19866 -11.82809 -11.46514 -11.20050 -10.99793 -10.94036 -10.66163 -10.21619 -10.14932 -8.34476 -6.37150 -0.43941 0.19888 1.26316 1.30542 1.36974 1.58371 2.26595 2.82703 2.89294 3.29108 3.53317 3.86442 3.89170 4.01490 4.22425 4.33330 4.48385 4.50199 4.66470 4.71277 4.96600 5.02141 5.04546 5.20437 5.26597 5.40894 5.53664 5.62050 5.69124 6.21293 6.67915 6.76509 6.88132 7.24681 8.82859 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.011132 C = 0.010167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.936065 B = 2514.588743 C = 2753.260184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 C -0.027 4.027 4 H 0.069 0.931 5 C -0.492 4.492 6 H 0.030 0.970 7 C 0.015 3.985 8 N -0.942 5.942 9 Si 0.922 3.078 10 H -0.246 1.246 11 H -0.290 1.290 12 H -0.248 1.248 13 C 0.391 3.609 14 O -0.489 6.489 15 C -0.236 4.236 16 C -0.043 4.043 17 C -0.170 4.170 18 C 0.120 3.880 19 N -0.508 5.508 20 C 0.138 3.862 21 H 0.067 0.933 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.267 0.733 27 H 0.140 0.860 28 H 0.180 0.820 29 H 0.202 0.798 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -5.346 -15.479 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.046 4.046 4 H 0.087 0.913 5 C -0.530 4.530 6 H 0.049 0.951 7 C -0.182 4.182 8 N -0.582 5.582 9 Si 0.745 3.255 10 H -0.170 1.170 11 H -0.216 1.216 12 H -0.172 1.172 13 C 0.270 3.730 14 O -0.366 6.366 15 C -0.239 4.239 16 C -0.069 4.069 17 C -0.189 4.189 18 C -0.037 4.037 19 N -0.217 5.217 20 C -0.019 4.019 21 H 0.086 0.914 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.157 0.843 28 H 0.198 0.802 29 H 0.218 0.782 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.985 -5.181 -15.610 17.869 hybrid contribution 0.475 0.849 1.121 1.484 sum 7.461 -4.332 -14.489 16.863 Atomic orbital electron populations 1.21617 0.94313 1.01418 1.01956 1.21292 0.97524 0.93718 1.00691 1.19758 0.89605 0.97578 0.97686 0.91293 1.20790 1.43955 0.94963 0.93279 0.95135 1.25918 0.94023 0.98969 0.99322 1.70037 1.44751 1.13294 1.30079 0.86093 0.80759 0.78180 0.80459 1.17038 1.21594 1.17175 1.23819 0.93792 0.68863 0.86569 1.90360 1.66254 1.37786 1.42212 1.21963 0.96521 1.08498 0.96911 1.22138 0.93663 0.91293 0.99803 1.22524 1.03695 1.01242 0.91463 1.23756 0.88064 0.90497 1.01351 1.67801 1.15099 1.13711 1.25088 1.23307 1.01060 0.90967 0.86604 0.91361 0.94254 0.91896 0.90849 0.94121 0.92416 0.84259 0.80233 0.78174 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.79 71.98 0.70 -4.03 16 2 C -0.09 -3.60 5.37 30.59 0.16 -3.44 16 3 C -0.03 -1.21 1.13 -12.29 -0.01 -1.23 16 4 H 0.07 2.89 4.09 -2.39 -0.01 2.88 16 5 C -0.49 -28.15 7.25 25.60 0.19 -27.97 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.02 0.90 5.47 84.66 0.46 1.36 16 8 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 9 Si 0.92 43.18 26.80 68.60 1.84 45.02 16 10 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 12 H -0.25 -10.83 6.57 99.48 0.65 -10.18 16 13 C 0.39 17.47 5.57 28.03 0.16 17.62 16 14 O -0.49 -25.29 16.42 -2.96 -0.05 -25.34 16 15 C -0.24 -8.43 5.87 -20.06 -0.12 -8.55 16 16 C -0.04 -1.28 9.72 22.78 0.22 -1.05 16 17 C -0.17 -3.47 10.10 22.32 0.23 -3.25 16 18 C 0.12 2.45 11.17 84.71 0.95 3.40 16 19 N -0.51 -14.10 10.34 -194.51 -2.01 -16.12 16 20 C 0.14 4.37 10.54 85.10 0.90 5.27 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.04 1.63 7.29 -2.39 -0.02 1.62 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.14 4.09 7.74 -2.91 -0.02 4.07 16 28 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.17 5.02 6.38 -2.91 -0.02 5.00 16 Total: -1.00 -72.84 260.82 4.99 -67.85 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.08 Total: 9.44 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 3.83 Total: -21.86 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -1.71 Total: -75.11 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.05 Total: -25.34 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.84 Total: 45.02 kcal Total: -72.84 4.99 -67.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.413 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds