Wall clock time and date at job start Mon Mar 30 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99922 * 2 1 4 4 H 1.48499 * 109.47209 * 270.00557 * 3 2 1 5 5 H 1.48505 * 109.47204 * 30.00070 * 3 2 1 6 6 H 1.48503 * 109.47284 * 150.00400 * 3 2 1 7 7 C 1.37878 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00121 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00290 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47381 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99913 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00333 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.99781 * 180.02562 * 11 10 9 14 14 C 1.50707 * 109.47247 * 180.02562 * 13 11 10 15 15 C 1.38238 * 119.99792 * 89.99994 * 14 13 11 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.97930 * 14 13 11 20 20 H 0.96998 * 119.99926 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47516 * 59.98871 * 9 7 2 22 22 H 1.09004 * 109.46835 * 299.99500 * 9 7 2 23 23 H 0.96998 * 119.99656 * 0.02562 * 10 9 7 24 24 H 1.09005 * 109.47656 * 60.00320 * 13 11 10 25 25 H 1.09000 * 109.47265 * 299.99628 * 13 11 10 26 26 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 27 27 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 29 29 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 30 30 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3251 -2.8214 -0.0020 12 8 6.1132 -1.8995 -0.0034 13 6 5.8274 -4.2421 -0.0024 14 6 7.3345 -4.2421 -0.0029 15 6 8.0260 -4.2424 1.1941 16 6 9.4084 -4.2429 1.1936 17 6 10.0992 -4.2437 -0.0037 18 6 9.4077 -4.2381 -1.2006 19 6 8.0253 -4.2423 -1.2002 20 1 -0.4850 0.8400 0.0004 21 1 3.8753 -0.6802 0.8887 22 1 3.8745 -0.6800 -0.8912 23 1 3.3697 -3.3124 -0.0010 24 1 5.4635 -4.7560 -0.8922 25 1 5.4648 -4.7560 0.8878 26 1 7.4862 -4.2421 2.1296 27 1 9.9486 -4.2427 2.1288 28 1 11.1792 -4.2446 -0.0039 29 1 9.9474 -4.2343 -2.1361 30 1 7.4851 -4.2428 -2.1354 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048151596.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:55 Heat of formation + Delta-G solvation = -45.297296 kcal Electronic energy + Delta-G solvation = -13779.662962 eV Core-core repulsion = 11345.375431 eV Total energy + Delta-G solvation = -2434.287531 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 219.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89937 -39.53674 -36.15714 -34.42846 -33.73624 -31.72947 -30.35345 -28.12695 -24.27241 -23.43330 -22.48165 -21.32167 -19.16986 -17.83229 -17.55656 -16.97897 -16.64098 -16.08872 -15.70158 -15.63674 -14.77874 -14.36113 -14.30290 -14.15531 -13.91445 -13.32787 -13.05523 -12.92448 -12.66670 -11.97568 -11.93701 -11.82914 -11.66419 -10.93094 -10.88594 -9.92799 -9.76022 -9.58709 -8.41135 -6.47959 0.46250 0.55986 1.31158 1.33643 1.46119 1.74842 2.26830 2.48243 2.94275 3.02296 3.74275 3.99028 4.15402 4.21297 4.31363 4.42640 4.61206 4.69820 4.79429 4.81351 5.01790 5.16311 5.20412 5.25664 5.52766 5.59826 5.65199 5.72587 6.08169 6.17463 6.53339 6.85794 7.15157 7.43230 8.73621 Molecular weight = 219.10amu Principal moments of inertia in cm(-1) A = 0.057518 B = 0.005543 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.686551 B = 5050.603185 C = 5227.500183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.231 3.769 10 N -0.707 5.707 11 C 0.501 3.499 12 O -0.594 6.594 13 C -0.093 4.093 14 C -0.080 4.080 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.125 4.125 20 H 0.273 0.727 21 H 0.010 0.990 22 H 0.009 0.991 23 H 0.410 0.590 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.740 -10.918 -0.021 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.107 3.893 10 N -0.357 5.357 11 C 0.289 3.711 12 O -0.475 6.475 13 C -0.132 4.132 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.143 4.143 20 H 0.082 0.918 21 H 0.028 0.972 22 H 0.027 0.973 23 H 0.246 0.754 24 H 0.145 0.855 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.099 -10.147 -0.020 19.883 hybrid contribution -0.534 0.701 -0.009 0.881 sum 16.565 -9.446 -0.029 19.069 Atomic orbital electron populations 1.69976 1.07636 1.28615 1.50709 1.25579 0.95515 1.02585 0.93595 0.85879 0.79187 0.79503 0.79441 1.19000 1.19687 1.18745 1.21302 0.89923 0.94645 1.52579 0.92082 1.19073 0.93373 0.81345 0.95462 1.46053 1.06834 1.09604 1.73190 1.21326 0.81865 0.92514 0.75432 1.90650 1.56375 1.48324 1.52187 1.20725 0.92765 0.92170 1.07586 1.19541 0.94274 1.00082 0.94163 1.21265 0.95280 1.00100 0.97684 1.21423 0.93984 1.00008 0.99332 1.21481 1.01090 0.99898 0.92330 1.21425 0.93986 0.99997 0.99336 1.21263 0.95279 1.00087 0.97678 0.91818 0.97210 0.97306 0.75394 0.85520 0.85551 0.85620 0.84109 0.83749 0.84102 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.94 44.48 27.47 68.60 1.88 46.37 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.26 -12.50 6.54 99.48 0.65 -11.85 16 7 C -0.55 -30.29 9.83 25.60 0.25 -30.04 16 8 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 9 C 0.23 11.48 4.50 85.63 0.38 11.87 16 10 N -0.71 -28.09 5.55 -466.79 -2.59 -30.68 16 11 C 0.50 18.59 7.82 87.66 0.69 19.28 16 12 O -0.59 -27.46 16.03 -3.06 -0.05 -27.51 16 13 C -0.09 -2.34 5.83 29.10 0.17 -2.17 16 14 C -0.08 -2.16 4.37 -19.86 -0.09 -2.24 16 15 C -0.13 -3.19 9.70 22.27 0.22 -2.97 16 16 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 17 C -0.13 -2.69 10.05 22.27 0.22 -2.46 16 18 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 19 C -0.13 -3.18 9.70 22.27 0.22 -2.96 16 20 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 21 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 22 H 0.01 0.47 7.57 -2.38 -0.02 0.45 16 23 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16 24 H 0.13 2.49 8.09 -2.38 -0.02 2.47 16 25 H 0.13 2.48 8.08 -2.39 -0.02 2.47 16 26 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 27 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 29 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -70.47 266.83 2.83 -67.64 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.31 Total: 14.49 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 2.97 Total: -14.95 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.29 Total: -86.05 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -70.47 2.83 -67.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048151596.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.346 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds